c2pfam

AT4G34830.1 :

Domain Description Evalue Bits GA Start End
Cyclin_C Cyclin, C-terminal domain 0.00049 10 21.20 155 190
PPR_2 PPR repeat family 0.4 1 30.00 409 430
PPR PPR repeat 0.35 1 25.00 410 429
PPR_3 Pentatricopeptide repeat domain 0.00047 10 25.00 444 477
PPR_2 PPR repeat family 0.11 2 30.00 448 478
PPR_1 PPR repeat 0.12 2 23.80 463 476
PPR_2 PPR repeat family 0.04 4 30.00 465 498
PPR PPR repeat 0.00026 11 25.00 468 497
PPR_long Pentacotripeptide-repeat region of PRORP 8.9E-18 54 27.00 468 638
PPR_3 Pentatricopeptide repeat domain 5.3E-10 29 25.00 489 547
PPR_1 PPR repeat 4.2E-07 19 23.80 497 529
PPR_2 PPR repeat family 9E-14 41 30.00 504 549
PPR PPR repeat 2.7E-09 26 25.00 505 533
ATP13 Mitochondrial ATPase expression 0.26 1 26.70 505 595
PPR_3 Pentatricopeptide repeat domain 3.4E-12 36 25.00 524 584
PPR_1 PPR repeat 1.2E-06 18 23.80 532 557
PPR_2 PPR repeat family 1.7E-05 15 30.00 538 572
PPR PPR repeat 2.1E-05 14 25.00 539 567
PPR_3 Pentatricopeptide repeat domain 1.5E-08 24 25.00 565 621
PPR_1 PPR repeat 4.3E-10 29 23.80 566 599
PPR_2 PPR repeat family 1.9E-11 34 30.00 570 621
PPR PPR repeat 3.8E-08 23 25.00 573 600
TPR_19 Tetratricopeptide repeat 0.00052 10 25.00 585 635
Clathrin Region in Clathrin and VPS 0.025 4 23.60 599 637
ATP13 Mitochondrial ATPase expression 0.57 0 26.70 602 646
PPR_3 Pentatricopeptide repeat domain 0.00096 9 25.00 602 642
PPR_1 PPR repeat 0.00069 9 23.80 606 631
PPR_2 PPR repeat family 1.9E-06 18 30.00 607 655
PPR PPR repeat 3.3E-06 17 25.00 614 640
TPR_7 Tetratricopeptide repeat 0.31 1 27.90 614 633
PPR PPR repeat 1.1E-07 21 25.00 646 675
PPR_2 PPR repeat family 3.6E-08 23 30.00 646 687
PPR_1 PPR repeat 0.25 1 23.80 647 671
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-16 50 27.00 647 802
PPR_3 Pentatricopeptide repeat domain 8.1E-06 15 25.00 648 690
Clathrin Region in Clathrin and VPS 0.59 -1 23.60 652 672
TPR_7 Tetratricopeptide repeat 0.025 4 27.90 653 669
PPR_1 PPR repeat 0.0011 8 23.80 674 703
PPR_2 PPR repeat family 1.9E-08 24 30.00 677 726
PPR PPR repeat 0.00025 11 25.00 681 710
PPR_3 Pentatricopeptide repeat domain 2.5E-13 40 25.00 701 758
PPR_1 PPR repeat 8.2E-05 12 23.80 709 740
PPR_2 PPR repeat family 2E-11 34 30.00 714 760
Cyclin_C Cyclin, C-terminal domain 0.1 2 21.20 714 756
PPR PPR repeat 2.8E-08 23 25.00 715 742
Clathrin Region in Clathrin and VPS 0.05 3 23.60 722 743
TPR_7 Tetratricopeptide repeat 0.0011 9 27.90 722 739
TPR_19 Tetratricopeptide repeat 0.02 5 25.00 728 775
ATP13 Mitochondrial ATPase expression 4.4E-05 13 26.70 743 775
PPR_1 PPR repeat 0.00024 10 23.80 745 775
PPR_2 PPR repeat family 5E-12 35 30.00 747 791
PPR PPR repeat 3.1E-06 17 25.00 751 780
PPR_long Pentacotripeptide-repeat region of PRORP 0.00028 10 27.00 765 819
PPR_3 Pentatricopeptide repeat domain 7.2E-07 19 25.00 772 829
PPR_1 PPR repeat 0.0011 8 23.80 779 790
PPR PPR repeat 0.3 1 25.00 785 815
PPR_2 PPR repeat family 0.51 0 30.00 796 818

1089

Cyclin_C
PPR_2
PPR
PPR_3
PPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
ATP13
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_19
Clathrin
ATP13
PPR_3
PPR_1
PPR_2
PPR
TPR_7
PPR
PPR_2
PPR_1
PPR_long
PPR_3
Clathrin
TPR_7
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
Cyclin_C
PPR
Clathrin
TPR_7
TPR_19
ATP13
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2

References:

TPR_7

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

Cyclin_C
8152925 Evidence for a protein domain superfamily shared by the cyclins, TFIIB and RB/p107. Nucleic Acids Res 1994;22:946-952.
8591034 The crystal structure of cyclin A Structure. 1995;3:1235-1247.
8756328 Structural basis of cyclin-dependant kinase activation by phosphorylation. Nat Struct Biol. 1996;3:696-700.
2001396 Isolation and characterization of a human cDNA encoding uracil-DNA glycosylase. Biochim Biophys Acta 1991;1088:197-207.

ATP13

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
Cyclin_C	Cyclin, C-terminal domain	0.00049	10	21.20	155	190
PPR_2	PPR repeat family	0.4	1	30.00	409	430
PPR	PPR repeat	0.35	1	25.00	410	429
PPR_3	Pentatricopeptide repeat domain	0.00047	10	25.00	444	477
PPR_2	PPR repeat family	0.11	2	30.00	448	478
PPR_1	PPR repeat	0.12	2	23.80	463	476
PPR_2	PPR repeat family	0.04	4	30.00	465	498
PPR	PPR repeat	0.00026	11	25.00	468	497
PPR_long	Pentacotripeptide-repeat region of PRORP	8.9E-18	54	27.00	468	638
PPR_3	Pentatricopeptide repeat domain	5.3E-10	29	25.00	489	547
PPR_1	PPR repeat	4.2E-07	19	23.80	497	529
PPR_2	PPR repeat family	9E-14	41	30.00	504	549
PPR	PPR repeat	2.7E-09	26	25.00	505	533
ATP13	Mitochondrial ATPase expression	0.26	1	26.70	505	595
PPR_3	Pentatricopeptide repeat domain	3.4E-12	36	25.00	524	584
PPR_1	PPR repeat	1.2E-06	18	23.80	532	557
PPR_2	PPR repeat family	1.7E-05	15	30.00	538	572
PPR	PPR repeat	2.1E-05	14	25.00	539	567
PPR_3	Pentatricopeptide repeat domain	1.5E-08	24	25.00	565	621
PPR_1	PPR repeat	4.3E-10	29	23.80	566	599
PPR_2	PPR repeat family	1.9E-11	34	30.00	570	621
PPR	PPR repeat	3.8E-08	23	25.00	573	600
TPR_19	Tetratricopeptide repeat	0.00052	10	25.00	585	635
Clathrin	Region in Clathrin and VPS	0.025	4	23.60	599	637
ATP13	Mitochondrial ATPase expression	0.57	0	26.70	602	646
PPR_3	Pentatricopeptide repeat domain	0.00096	9	25.00	602	642
PPR_1	PPR repeat	0.00069	9	23.80	606	631
PPR_2	PPR repeat family	1.9E-06	18	30.00	607	655
PPR	PPR repeat	3.3E-06	17	25.00	614	640
TPR_7	Tetratricopeptide repeat	0.31	1	27.90	614	633
PPR	PPR repeat	1.1E-07	21	25.00	646	675
PPR_2	PPR repeat family	3.6E-08	23	30.00	646	687
PPR_1	PPR repeat	0.25	1	23.80	647	671
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-16	50	27.00	647	802
PPR_3	Pentatricopeptide repeat domain	8.1E-06	15	25.00	648	690
Clathrin	Region in Clathrin and VPS	0.59	-1	23.60	652	672
TPR_7	Tetratricopeptide repeat	0.025	4	27.90	653	669
PPR_1	PPR repeat	0.0011	8	23.80	674	703
PPR_2	PPR repeat family	1.9E-08	24	30.00	677	726
PPR	PPR repeat	0.00025	11	25.00	681	710
PPR_3	Pentatricopeptide repeat domain	2.5E-13	40	25.00	701	758
PPR_1	PPR repeat	8.2E-05	12	23.80	709	740
PPR_2	PPR repeat family	2E-11	34	30.00	714	760
Cyclin_C	Cyclin, C-terminal domain	0.1	2	21.20	714	756
PPR	PPR repeat	2.8E-08	23	25.00	715	742
Clathrin	Region in Clathrin and VPS	0.05	3	23.60	722	743
TPR_7	Tetratricopeptide repeat	0.0011	9	27.90	722	739
TPR_19	Tetratricopeptide repeat	0.02	5	25.00	728	775
ATP13	Mitochondrial ATPase expression	4.4E-05	13	26.70	743	775
PPR_1	PPR repeat	0.00024	10	23.80	745	775
PPR_2	PPR repeat family	5E-12	35	30.00	747	791
PPR	PPR repeat	3.1E-06	17	25.00	751	780
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00028	10	27.00	765	819
PPR_3	Pentatricopeptide repeat domain	7.2E-07	19	25.00	772	829
PPR_1	PPR repeat	0.0011	8	23.80	779	790
PPR	PPR repeat	0.3	1	25.00	785	815
PPR_2	PPR repeat family	0.51	0	30.00	796	818