c2pfam

AT4G35800.1 :

Domain Description Evalue Bits GA Start End
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 0 370 20.30 14 351
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 0 240 23.40 353 521
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 0 165 21.20 525 688
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 0 133 24.30 719 819
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 0 354 20.70 826 1416
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 0 227 21.10 892 1076
RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 0 182 20.50 1161 1295
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.017 5 20.30 1537 1551
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 4.1E-06 16 20.30 1552 1565
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 8.4E-06 15 20.30 1566 1579
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00042 10 20.30 1580 1593
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1594 1607
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1608 1621
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1622 1635
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 1.1E-05 15 20.30 1636 1649
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 5.2E-05 13 20.30 1650 1663
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1664 1677
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1678 1691
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 4.8E-06 16 20.30 1692 1705
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00076 9 20.30 1706 1719
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.0018 8 20.30 1721 1733
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.7 0 20.30 1734 1749
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 7.4E-05 12 20.30 1753 1766
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.00026 11 20.30 1767 1780
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat 0.88 -1 20.30 1774 1785

1839

RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R
RNA_pol_Rpb1_R

References:

RNA_pol_Rpb1_R
12206456 CTD phosphatase: role in RNA polymerase II cycling and the regulation of transcript elongation. Prog Nucleic Acid Res Mol Biol 2002;72:333-365.

RNA_pol_Rpb1_7
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_6
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_5
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_4
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_3
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_2
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

RNA_pol_Rpb1_1
8910400 Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. J Biol Chem 1996;271:27969-27974.
11313498 Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001;292:1863-1876.

Domain	Description	Evalue	Bits	GA	Start	End
RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	0	370	20.30	14	351
RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	0	240	23.40	353	521
RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	0	165	21.20	525	688
RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	0	133	24.30	719	819
RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	0	354	20.70	826	1416
RNA_pol_Rpb1_6	RNA polymerase Rpb1, domain 6	0	227	21.10	892	1076
RNA_pol_Rpb1_7	RNA polymerase Rpb1, domain 7	0	182	20.50	1161	1295
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.017	5	20.30	1537	1551
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	4.1E-06	16	20.30	1552	1565
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	8.4E-06	15	20.30	1566	1579
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00042	10	20.30	1580	1593
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1594	1607
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1608	1621
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1622	1635
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	1.1E-05	15	20.30	1636	1649
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	5.2E-05	13	20.30	1650	1663
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1664	1677
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1678	1691
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	4.8E-06	16	20.30	1692	1705
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00076	9	20.30	1706	1719
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.0018	8	20.30	1721	1733
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.7	0	20.30	1734	1749
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	7.4E-05	12	20.30	1753	1766
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.00026	11	20.30	1767	1780
RNA_pol_Rpb1_R	RNA polymerase Rpb1 C-terminal repeat	0.88	-1	20.30	1774	1785