c2pfam

AT4G36630.1 :

Domain Description Evalue Bits GA Start End
CNH CNH domain 4.1E-24 75 20.20 72 277
AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain 8.5E-05 13 29.50 275 363
TPR_14 Tetratricopeptide repeat 0.94 1 23.50 305 318
TPR_19 Tetratricopeptide repeat 0.022 5 25.00 307 325
TPR_2 Tetratricopeptide repeat 0.34 1 22.40 307 318
TPR_1 Tetratricopeptide repeat 0.23 1 20.40 308 319
PPR PPR repeat 0.88 0 25.00 308 318
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0063 7 27.20 328 365
Clathrin Region in Clathrin and VPS 0.76 -1 23.60 336 356
TPR_16 Tetratricopeptide repeat 0.099 3 32.70 340 357
TPR_2 Tetratricopeptide repeat 0.0088 6 22.40 341 358
TPR_14 Tetratricopeptide repeat 0.1 4 23.50 341 359
TPR_1 Tetratricopeptide repeat 0.037 4 20.40 342 357
TPR_19 Tetratricopeptide repeat 0.86 0 25.00 344 357
Clathrin Region in Clathrin and VPS 3.3E-07 20 23.60 496 568
Vps39_1 Vacuolar sorting protein 39 domain 1 3.4E-31 98 21.40 502 612
PPR PPR repeat 0.5 1 25.00 504 524
TPR_14 Tetratricopeptide repeat 0.078 4 23.50 505 524
TPR_19 Tetratricopeptide repeat 0.29 2 25.00 506 526
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.71 0 27.20 541 571
TPR_16 Tetratricopeptide repeat 0.042 5 32.70 543 569
PPR PPR repeat 0.011 6 25.00 544 567
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 544 572
TPR_19 Tetratricopeptide repeat 0.38 1 25.00 549 570
Clathrin Region in Clathrin and VPS 1.2E-10 31 23.60 632 762
TPR_1 Tetratricopeptide repeat 0.14 2 20.40 728 743
Vps39_2 Vacuolar sorting protein 39 domain 2 2.9E-37 117 21.20 875 983
zf-HC5HC2H PHD-like zinc-binding domain 1.5E-05 15 29.10 924 988

1000

CNH
AlaDh_PNT_N
TPR_14
TPR_19
TPR_2
TPR_1
PPR
ANAPC3
Clathrin
TPR_16
TPR_2
TPR_14
TPR_1
TPR_19
Clathrin
Vps39_1
PPR
TPR_14
TPR_19
ANAPC3
TPR_16
PPR
TPR_14
TPR_19
Clathrin
TPR_1
Vps39_2
zf-HC5HC2H

References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

zf-HC5HC2H

TPR_16

TPR_14

AlaDh_PNT_N
11354603 Lysine metabolism in higher plants. Amino Acids 2001;20:261-279.

ANAPC3

Vps39_2
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

CNH

Domain	Description	Evalue	Bits	GA	Start	End
CNH	CNH domain	4.1E-24	75	20.20	72	277
AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	8.5E-05	13	29.50	275	363
TPR_14	Tetratricopeptide repeat	0.94	1	23.50	305	318
TPR_19	Tetratricopeptide repeat	0.022	5	25.00	307	325
TPR_2	Tetratricopeptide repeat	0.34	1	22.40	307	318
TPR_1	Tetratricopeptide repeat	0.23	1	20.40	308	319
PPR	PPR repeat	0.88	0	25.00	308	318
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0063	7	27.20	328	365
Clathrin	Region in Clathrin and VPS	0.76	-1	23.60	336	356
TPR_16	Tetratricopeptide repeat	0.099	3	32.70	340	357
TPR_2	Tetratricopeptide repeat	0.0088	6	22.40	341	358
TPR_14	Tetratricopeptide repeat	0.1	4	23.50	341	359
TPR_1	Tetratricopeptide repeat	0.037	4	20.40	342	357
TPR_19	Tetratricopeptide repeat	0.86	0	25.00	344	357
Clathrin	Region in Clathrin and VPS	3.3E-07	20	23.60	496	568
Vps39_1	Vacuolar sorting protein 39 domain 1	3.4E-31	98	21.40	502	612
PPR	PPR repeat	0.5	1	25.00	504	524
TPR_14	Tetratricopeptide repeat	0.078	4	23.50	505	524
TPR_19	Tetratricopeptide repeat	0.29	2	25.00	506	526
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.71	0	27.20	541	571
TPR_16	Tetratricopeptide repeat	0.042	5	32.70	543	569
PPR	PPR repeat	0.011	6	25.00	544	567
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	544	572
TPR_19	Tetratricopeptide repeat	0.38	1	25.00	549	570
Clathrin	Region in Clathrin and VPS	1.2E-10	31	23.60	632	762
TPR_1	Tetratricopeptide repeat	0.14	2	20.40	728	743
Vps39_2	Vacuolar sorting protein 39 domain 2	2.9E-37	117	21.20	875	983
zf-HC5HC2H	PHD-like zinc-binding domain	1.5E-05	15	29.10	924	988