c2pfam

AT4G37170.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.9 0 30.00 49 64
PPR_1 PPR repeat 0.006 6 23.80 49 64
PPR PPR repeat 0.21 2 25.00 50 64
PPR PPR repeat 0.21 2 25.00 61 80
PPR_2 PPR repeat family 0.092 3 30.00 61 95
PPR_1 PPR repeat 0.15 2 23.80 61 77
PPR_long Pentacotripeptide-repeat region of PRORP 0.0047 6 27.00 83 135
PPR_3 Pentatricopeptide repeat domain 5.6E-05 13 25.00 86 131
PPR_2 PPR repeat family 0.22 2 30.00 86 118
PPR PPR repeat 0.00069 10 25.00 86 116
Transpos_assoc Transposase-associated domain 0.0011 9 27.10 93 124
PPR_3 Pentatricopeptide repeat domain 0.00032 11 25.00 109 146
AEP1 ATPase expression protein 1 0.056 2 27.00 113 161
PPR_1 PPR repeat 2.3E-06 17 23.80 115 146
PPR_2 PPR repeat family 1.7E-07 21 30.00 118 150
PPR PPR repeat 4E-08 23 25.00 121 149
TPR_14 Tetratricopeptide repeat 0.82 1 23.50 123 145
TPR_19 Tetratricopeptide repeat 0.64 1 25.00 123 150
PPR_2 PPR repeat family 6.9E-09 26 30.00 150 180
PPR_1 PPR repeat 1.2E-08 25 23.80 150 178
PPR_3 Pentatricopeptide repeat domain 0.083 3 25.00 150 180
PPR PPR repeat 4E-11 33 25.00 153 180
TPR_14 Tetratricopeptide repeat 0.042 5 23.50 157 187
TPR_16 Tetratricopeptide repeat 0.41 2 32.70 161 181
TPR_2 Tetratricopeptide repeat 0.16 3 22.40 161 180
TPR_19 Tetratricopeptide repeat 0.067 4 25.00 166 205
PPR_long Pentacotripeptide-repeat region of PRORP 0.0001 12 27.00 167 298
PPR_2 PPR repeat family 2.6E-10 31 30.00 180 225
PPR_1 PPR repeat 0.18 2 23.80 181 208
PPR PPR repeat 2.8E-08 24 25.00 183 210
TPR_1 Tetratricopeptide repeat 0.91 0 20.40 192 205
Transpos_assoc Transposase-associated domain 0.62 0 27.10 235 256
PPR_1 PPR repeat 5.1E-05 13 23.80 248 278
PPR_2 PPR repeat family 0.00031 11 30.00 252 283
PPR PPR repeat 1E-08 25 25.00 254 283
AEP1 ATPase expression protein 1 2.3E-05 14 27.00 254 297
TPR_19 Tetratricopeptide repeat 0.35 2 25.00 259 283
TPR_2 Tetratricopeptide repeat 0.72 1 22.40 263 282
PPR_1 PPR repeat 0.00012 12 23.80 281 309
PPR_2 PPR repeat family 3.6E-12 36 30.00 282 330
PPR PPR repeat 1.5E-07 22 25.00 285 311
PPR_long Pentacotripeptide-repeat region of PRORP 0.0015 8 27.00 295 376
PPR_3 Pentatricopeptide repeat domain 0.038 4 25.00 316 355
AEP1 ATPase expression protein 1 0.97 -2 27.00 357 377
PPR_1 PPR repeat 0.045 4 23.80 358 378
PPR PPR repeat 0.0085 7 25.00 358 376
PPR_1 PPR repeat 6.1E-07 19 23.80 382 409
PPR_3 Pentatricopeptide repeat domain 3.3E-07 20 25.00 382 430
PPR_2 PPR repeat family 1.9E-12 37 30.00 383 430
PPR PPR repeat 8.9E-11 32 25.00 386 415
PPR_long Pentacotripeptide-repeat region of PRORP 0.00061 9 27.00 388 479
TPR_14 Tetratricopeptide repeat 0.00078 11 23.50 388 420
TPR_2 Tetratricopeptide repeat 0.0034 8 22.40 395 413
TPR_1 Tetratricopeptide repeat 0.007 6 20.40 396 409
TPR_16 Tetratricopeptide repeat 0.006 7 32.70 397 430
TPR_19 Tetratricopeptide repeat 0.17 3 25.00 397 413
PPR_1 PPR repeat 0.083 3 23.80 415 443
PPR PPR repeat 0.00021 12 25.00 421 448
Mic1 Colon cancer-associated protein Mic1-like 0.00047 10 20.80 440 490
PPR PPR repeat 0.00029 11 25.00 458 483
PPR_1 PPR repeat 0.12 2 23.80 458 473
PPR_2 PPR repeat family 0.054 4 30.00 459 483
PPR PPR repeat 0.97 0 25.00 491 509
TPR_14 Tetratricopeptide repeat 0.01 7 23.50 495 529
TPR_19 Tetratricopeptide repeat 0.0013 9 25.00 502 540
TPR_16 Tetratricopeptide repeat 0.17 3 32.70 502 523
TPR_2 Tetratricopeptide repeat 0.14 3 22.40 502 521
TPR_1 Tetratricopeptide repeat 0.84 0 20.40 502 521
TPR_17 Tetratricopeptide repeat 0.001 10 24.40 513 540
PPR_2 PPR repeat family 0.053 4 30.00 521 553
PPR PPR repeat 4.1E-06 17 25.00 523 553
TPR_1 Tetratricopeptide repeat 0.17 2 20.40 524 540
TPR_2 Tetratricopeptide repeat 0.1 3 22.40 525 540
DYW_deaminase DYW family of nucleic acid deaminases 0 125 31.60 557 681

691

PPR_2
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR_long
PPR_3
PPR_2
PPR
Transpos_assoc
PPR_3
AEP1
PPR_1
PPR_2
PPR
TPR_14
TPR_19
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_16
TPR_2
TPR_19
PPR_long
PPR_2
PPR_1
PPR
TPR_1
Transpos_assoc
PPR_1
PPR_2
PPR
AEP1
TPR_19
TPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_3
AEP1
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
TPR_14
TPR_2
TPR_1
TPR_16
TPR_19
PPR_1
PPR
Mic1
PPR
PPR_1
PPR_2
PPR
TPR_14
TPR_19
TPR_16
TPR_2
TPR_1
TPR_17
PPR_2
PPR
TPR_1
TPR_2
DYW_deaminase

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

Mic1

TPR_16

DYW_deaminase

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Transpos_assoc

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.9	0	30.00	49	64
PPR_1	PPR repeat	0.006	6	23.80	49	64
PPR	PPR repeat	0.21	2	25.00	50	64
PPR	PPR repeat	0.21	2	25.00	61	80
PPR_2	PPR repeat family	0.092	3	30.00	61	95
PPR_1	PPR repeat	0.15	2	23.80	61	77
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0047	6	27.00	83	135
PPR_3	Pentatricopeptide repeat domain	5.6E-05	13	25.00	86	131
PPR_2	PPR repeat family	0.22	2	30.00	86	118
PPR	PPR repeat	0.00069	10	25.00	86	116
Transpos_assoc	Transposase-associated domain	0.0011	9	27.10	93	124
PPR_3	Pentatricopeptide repeat domain	0.00032	11	25.00	109	146
AEP1	ATPase expression protein 1	0.056	2	27.00	113	161
PPR_1	PPR repeat	2.3E-06	17	23.80	115	146
PPR_2	PPR repeat family	1.7E-07	21	30.00	118	150
PPR	PPR repeat	4E-08	23	25.00	121	149
TPR_14	Tetratricopeptide repeat	0.82	1	23.50	123	145
TPR_19	Tetratricopeptide repeat	0.64	1	25.00	123	150
PPR_2	PPR repeat family	6.9E-09	26	30.00	150	180
PPR_1	PPR repeat	1.2E-08	25	23.80	150	178
PPR_3	Pentatricopeptide repeat domain	0.083	3	25.00	150	180
PPR	PPR repeat	4E-11	33	25.00	153	180
TPR_14	Tetratricopeptide repeat	0.042	5	23.50	157	187
TPR_16	Tetratricopeptide repeat	0.41	2	32.70	161	181
TPR_2	Tetratricopeptide repeat	0.16	3	22.40	161	180
TPR_19	Tetratricopeptide repeat	0.067	4	25.00	166	205
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0001	12	27.00	167	298
PPR_2	PPR repeat family	2.6E-10	31	30.00	180	225
PPR_1	PPR repeat	0.18	2	23.80	181	208
PPR	PPR repeat	2.8E-08	24	25.00	183	210
TPR_1	Tetratricopeptide repeat	0.91	0	20.40	192	205
Transpos_assoc	Transposase-associated domain	0.62	0	27.10	235	256
PPR_1	PPR repeat	5.1E-05	13	23.80	248	278
PPR_2	PPR repeat family	0.00031	11	30.00	252	283
PPR	PPR repeat	1E-08	25	25.00	254	283
AEP1	ATPase expression protein 1	2.3E-05	14	27.00	254	297
TPR_19	Tetratricopeptide repeat	0.35	2	25.00	259	283
TPR_2	Tetratricopeptide repeat	0.72	1	22.40	263	282
PPR_1	PPR repeat	0.00012	12	23.80	281	309
PPR_2	PPR repeat family	3.6E-12	36	30.00	282	330
PPR	PPR repeat	1.5E-07	22	25.00	285	311
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0015	8	27.00	295	376
PPR_3	Pentatricopeptide repeat domain	0.038	4	25.00	316	355
AEP1	ATPase expression protein 1	0.97	-2	27.00	357	377
PPR_1	PPR repeat	0.045	4	23.80	358	378
PPR	PPR repeat	0.0085	7	25.00	358	376
PPR_1	PPR repeat	6.1E-07	19	23.80	382	409
PPR_3	Pentatricopeptide repeat domain	3.3E-07	20	25.00	382	430
PPR_2	PPR repeat family	1.9E-12	37	30.00	383	430
PPR	PPR repeat	8.9E-11	32	25.00	386	415
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00061	9	27.00	388	479
TPR_14	Tetratricopeptide repeat	0.00078	11	23.50	388	420
TPR_2	Tetratricopeptide repeat	0.0034	8	22.40	395	413
TPR_1	Tetratricopeptide repeat	0.007	6	20.40	396	409
TPR_16	Tetratricopeptide repeat	0.006	7	32.70	397	430
TPR_19	Tetratricopeptide repeat	0.17	3	25.00	397	413
PPR_1	PPR repeat	0.083	3	23.80	415	443
PPR	PPR repeat	0.00021	12	25.00	421	448
Mic1	Colon cancer-associated protein Mic1-like	0.00047	10	20.80	440	490
PPR	PPR repeat	0.00029	11	25.00	458	483
PPR_1	PPR repeat	0.12	2	23.80	458	473
PPR_2	PPR repeat family	0.054	4	30.00	459	483
PPR	PPR repeat	0.97	0	25.00	491	509
TPR_14	Tetratricopeptide repeat	0.01	7	23.50	495	529
TPR_19	Tetratricopeptide repeat	0.0013	9	25.00	502	540
TPR_16	Tetratricopeptide repeat	0.17	3	32.70	502	523
TPR_2	Tetratricopeptide repeat	0.14	3	22.40	502	521
TPR_1	Tetratricopeptide repeat	0.84	0	20.40	502	521
TPR_17	Tetratricopeptide repeat	0.001	10	24.40	513	540
PPR_2	PPR repeat family	0.053	4	30.00	521	553
PPR	PPR repeat	4.1E-06	17	25.00	523	553
TPR_1	Tetratricopeptide repeat	0.17	2	20.40	524	540
TPR_2	Tetratricopeptide repeat	0.1	3	22.40	525	540
DYW_deaminase	DYW family of nucleic acid deaminases	0	125	31.60	557	681