c2pfam

AT4G37380.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.014 5 25.00 71 89
PPR_3 Pentatricopeptide repeat domain 0.00076 9 25.00 89 140
PPR_2 PPR repeat family 8.7E-08 22 30.00 93 140
PPR_long Pentacotripeptide-repeat region of PRORP 0.00026 10 27.00 101 144
PPR_1 PPR repeat 0.0054 6 23.80 126 139
PPR_3 Pentatricopeptide repeat domain 0.017 5 25.00 160 189
TPR_19 Tetratricopeptide repeat 0.013 5 25.00 160 190
PPR PPR repeat 6.2E-06 16 25.00 165 190
PPR_2 PPR repeat family 0.0013 8 30.00 167 192
PPR_1 PPR repeat 0.00021 10 23.80 167 187
PPR_long Pentacotripeptide-repeat region of PRORP 0.05 2 27.00 188 223
PPR_3 Pentatricopeptide repeat domain 0.0017 8 25.00 192 223
PPR_2 PPR repeat family 3.6E-07 20 30.00 193 222
PPR PPR repeat 7E-09 25 25.00 193 223
PPR_1 PPR repeat 4.4E-05 13 23.80 196 218
TPR_19 Tetratricopeptide repeat 0.0041 7 25.00 198 217
TPR_16 Tetratricopeptide repeat 0.0082 6 32.70 201 220
TPR_2 Tetratricopeptide repeat 0.0077 6 22.40 201 216
PPR_1 PPR repeat 2.7E-07 20 23.80 218 248
PPR_3 Pentatricopeptide repeat domain 0.47 0 25.00 221 248
PPR_2 PPR repeat family 1.6E-09 27 30.00 222 269
PPR PPR repeat 1.4E-10 30 25.00 224 253
TPR_16 Tetratricopeptide repeat 0.29 1 32.70 233 254
PPR_3 Pentatricopeptide repeat domain 0.0097 5 25.00 288 318
PPR_2 PPR repeat family 8.8E-05 12 30.00 293 321
TPR_19 Tetratricopeptide repeat 0.13 2 25.00 294 324
PPR PPR repeat 7.6E-06 16 25.00 297 322
PPR_1 PPR repeat 0.0013 8 23.80 300 318
PPR_2 PPR repeat family 1.5E-14 43 30.00 323 372
PPR_1 PPR repeat 1.2E-06 18 23.80 324 352
PPR_3 Pentatricopeptide repeat domain 4.2E-05 13 25.00 324 371
PPR PPR repeat 1.9E-10 30 25.00 326 352
PPR_long Pentacotripeptide-repeat region of PRORP 1.9E-05 13 27.00 342 424
PPR PPR repeat 0.0014 8 25.00 368 388
PPR_2 PPR repeat family 0.021 5 30.00 368 395
PPR_1 PPR repeat 0.079 2 23.80 369 387
PPR_3 Pentatricopeptide repeat domain 0.00064 9 25.00 383 424
PPR_1 PPR repeat 8.5E-05 12 23.80 392 423
PPR_2 PPR repeat family 0.089 2 30.00 399 423
PPR PPR repeat 0.00077 9 25.00 399 423
PPR PPR repeat 0.66 0 25.00 430 446
PPR PPR repeat 0.00047 10 25.00 466 494
TPR_2 Tetratricopeptide repeat 0.46 0 22.40 466 480
PPR_3 Pentatricopeptide repeat domain 0.002 8 25.00 468 494
PPR_2 PPR repeat family 0.014 5 30.00 471 502
DYW_deaminase DYW family of nucleic acid deaminases 0 137 31.60 498 621

632

PPR
PPR_3
PPR_2
PPR_long
PPR_1
PPR_3
TPR_19
PPR
PPR_2
PPR_1
PPR_long
PPR_3
PPR_2
PPR
PPR_1
TPR_19
TPR_16
TPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_16
PPR_3
PPR_2
TPR_19
PPR
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR
PPR_2
PPR_1
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR
TPR_2
PPR_3
PPR_2
DYW_deaminase

References:

TPR_19

DYW_deaminase

TPR_16

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.014	5	25.00	71	89
PPR_3	Pentatricopeptide repeat domain	0.00076	9	25.00	89	140
PPR_2	PPR repeat family	8.7E-08	22	30.00	93	140
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00026	10	27.00	101	144
PPR_1	PPR repeat	0.0054	6	23.80	126	139
PPR_3	Pentatricopeptide repeat domain	0.017	5	25.00	160	189
TPR_19	Tetratricopeptide repeat	0.013	5	25.00	160	190
PPR	PPR repeat	6.2E-06	16	25.00	165	190
PPR_2	PPR repeat family	0.0013	8	30.00	167	192
PPR_1	PPR repeat	0.00021	10	23.80	167	187
PPR_long	Pentacotripeptide-repeat region of PRORP	0.05	2	27.00	188	223
PPR_3	Pentatricopeptide repeat domain	0.0017	8	25.00	192	223
PPR_2	PPR repeat family	3.6E-07	20	30.00	193	222
PPR	PPR repeat	7E-09	25	25.00	193	223
PPR_1	PPR repeat	4.4E-05	13	23.80	196	218
TPR_19	Tetratricopeptide repeat	0.0041	7	25.00	198	217
TPR_16	Tetratricopeptide repeat	0.0082	6	32.70	201	220
TPR_2	Tetratricopeptide repeat	0.0077	6	22.40	201	216
PPR_1	PPR repeat	2.7E-07	20	23.80	218	248
PPR_3	Pentatricopeptide repeat domain	0.47	0	25.00	221	248
PPR_2	PPR repeat family	1.6E-09	27	30.00	222	269
PPR	PPR repeat	1.4E-10	30	25.00	224	253
TPR_16	Tetratricopeptide repeat	0.29	1	32.70	233	254
PPR_3	Pentatricopeptide repeat domain	0.0097	5	25.00	288	318
PPR_2	PPR repeat family	8.8E-05	12	30.00	293	321
TPR_19	Tetratricopeptide repeat	0.13	2	25.00	294	324
PPR	PPR repeat	7.6E-06	16	25.00	297	322
PPR_1	PPR repeat	0.0013	8	23.80	300	318
PPR_2	PPR repeat family	1.5E-14	43	30.00	323	372
PPR_1	PPR repeat	1.2E-06	18	23.80	324	352
PPR_3	Pentatricopeptide repeat domain	4.2E-05	13	25.00	324	371
PPR	PPR repeat	1.9E-10	30	25.00	326	352
PPR_long	Pentacotripeptide-repeat region of PRORP	1.9E-05	13	27.00	342	424
PPR	PPR repeat	0.0014	8	25.00	368	388
PPR_2	PPR repeat family	0.021	5	30.00	368	395
PPR_1	PPR repeat	0.079	2	23.80	369	387
PPR_3	Pentatricopeptide repeat domain	0.00064	9	25.00	383	424
PPR_1	PPR repeat	8.5E-05	12	23.80	392	423
PPR_2	PPR repeat family	0.089	2	30.00	399	423
PPR	PPR repeat	0.00077	9	25.00	399	423
PPR	PPR repeat	0.66	0	25.00	430	446
PPR	PPR repeat	0.00047	10	25.00	466	494
TPR_2	Tetratricopeptide repeat	0.46	0	22.40	466	480
PPR_3	Pentatricopeptide repeat domain	0.002	8	25.00	468	494
PPR_2	PPR repeat family	0.014	5	30.00	471	502
DYW_deaminase	DYW family of nucleic acid deaminases	0	137	31.60	498	621