c2pfam

AT4G37890.1 :

Domain Description Evalue Bits GA Start End
zf-HC5HC2H_2 PHD-zinc-finger like domain 0.00015 12 27.00 151 199
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 7.8E-05 12 27.30 167 216
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.1E-06 18 27.00 168 214
zf-RING_5 zinc-RING finger domain 6.9E-06 16 27.90 168 215
zf-RING_2 Ring finger domain 3.1E-09 27 27.30 168 214
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2E-07 21 21.00 169 214
zf-RING_UBOX RING-type zinc-finger 2.7E-06 17 25.20 169 200
zf-RING_11 RING-like zinc finger 3.6E-12 36 27.00 169 198
PHD PHD-finger 0.00011 12 27.90 169 209
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.4E-05 15 21.40 170 218
zf-rbx1 RING-H2 zinc finger domain 2.4E-06 18 31.00 171 214
NOA36 NOA36 protein 0.0001 12 25.00 204 289
VWA_3 von Willebrand factor type A domain 2.2E-10 31 27.00 357 495
VWA von Willebrand factor type A domain 4.8E-13 40 23.00 357 464
VWA_2 von Willebrand factor type A domain 3.9E-12 37 27.00 359 459
zf-RING_5 zinc-RING finger domain 0.14 2 27.90 487 499
zf-rbx1 RING-H2 zinc finger domain 0.55 1 31.00 490 499

739

zf-HC5HC2H_2
Zn_ribbon_17
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-RING_11
PHD
zf-ANAPC11
zf-rbx1
NOA36
VWA_3
VWA
VWA_2
zf-RING_5
zf-rbx1

References:

VWA
1659389 More von Willebrand factor type A domains? Sequence similarities with malaria thrombospondin-related anonymous protein, dihydropyridine-sensitive calcium channel and inter-alpha-trypsin inhibitor. Biochem J 1991;279:908-911.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-HC5HC2H_2

VWA_3

VWA_2

zf-ANAPC11

zf-RING_UBOX

NOA36

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_11

zf-C3HC4_2

Zn_ribbon_17

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-HC5HC2H_2	PHD-zinc-finger like domain	0.00015	12	27.00	151	199
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	7.8E-05	12	27.30	167	216
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	2.1E-06	18	27.00	168	214
zf-RING_5	zinc-RING finger domain	6.9E-06	16	27.90	168	215
zf-RING_2	Ring finger domain	3.1E-09	27	27.30	168	214
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2E-07	21	21.00	169	214
zf-RING_UBOX	RING-type zinc-finger	2.7E-06	17	25.20	169	200
zf-RING_11	RING-like zinc finger	3.6E-12	36	27.00	169	198
PHD	PHD-finger	0.00011	12	27.90	169	209
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.4E-05	15	21.40	170	218
zf-rbx1	RING-H2 zinc finger domain	2.4E-06	18	31.00	171	214
NOA36	NOA36 protein	0.0001	12	25.00	204	289
VWA_3	von Willebrand factor type A domain	2.2E-10	31	27.00	357	495
VWA	von Willebrand factor type A domain	4.8E-13	40	23.00	357	464
VWA_2	von Willebrand factor type A domain	3.9E-12	37	27.00	359	459
zf-RING_5	zinc-RING finger domain	0.14	2	27.90	487	499
zf-rbx1	RING-H2 zinc finger domain	0.55	1	31.00	490	499