c2pfam

AT4G38010.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 5.7E-06 15 30.00 71 117
PPR_1 PPR repeat 0.021 4 23.80 71 81
PPR PPR repeat 0.0017 8 25.00 72 87
PPR_3 Pentatricopeptide repeat domain 0.024 4 25.00 73 118
PPR_1 PPR repeat 0.17 1 23.80 100 109
PPR_3 Pentatricopeptide repeat domain 0.0031 6 25.00 136 167
PPR_2 PPR repeat family 0.0017 7 30.00 140 168
PPR PPR repeat 8.6E-05 12 25.00 145 170
PPR_1 PPR repeat 0.013 4 23.80 145 167
PPR_1 PPR repeat 9E-06 14 23.80 170 198
PPR_2 PPR repeat family 4.3E-09 25 30.00 170 211
PPR_3 Pentatricopeptide repeat domain 3.2E-05 13 25.00 171 210
PPR PPR repeat 1.7E-07 20 25.00 173 198
PPR_long Pentacotripeptide-repeat region of PRORP 0.81 -2 27.00 194 212
PPR_3 Pentatricopeptide repeat domain 0.0022 7 25.00 242 268
PPR_1 PPR repeat 0.0019 7 23.80 243 265
PPR PPR repeat 1.6E-06 17 25.00 243 268
PPR_2 PPR repeat family 2.9E-06 16 30.00 243 268
ATP13 Mitochondrial ATPase expression 0.72 -2 26.70 244 266
PPR_long Pentacotripeptide-repeat region of PRORP 0.0014 7 27.00 252 365
PPR_2 PPR repeat family 2.1E-12 36 30.00 268 317
PPR_1 PPR repeat 3.2E-05 12 23.80 269 296
PPR PPR repeat 1E-09 27 25.00 271 298
ATP13 Mitochondrial ATPase expression 0.023 3 26.70 293 319
PPR_3 Pentatricopeptide repeat domain 0.081 2 25.00 300 320
PPR PPR repeat 0.031 4 25.00 310 336
PPR_3 Pentatricopeptide repeat domain 0.0042 6 25.00 335 380
PPR_2 PPR repeat family 0.0047 6 30.00 341 367
ATP13 Mitochondrial ATPase expression 0.0063 5 26.70 343 368
PPR PPR repeat 8.8E-06 15 25.00 345 372
PPR_1 PPR repeat 0.005 5 23.80 345 365
PPR_2 PPR repeat family 7.8E-14 41 30.00 370 419
PPR_1 PPR repeat 0.0019 7 23.80 371 398
PPR_3 Pentatricopeptide repeat domain 5.9E-07 18 25.00 371 417
PPR PPR repeat 1.1E-08 24 25.00 373 403
PPR_long Pentacotripeptide-repeat region of PRORP 6.8E-06 14 27.00 392 470
PPR_3 Pentatricopeptide repeat domain 6.6E-06 15 25.00 395 435
PPR_1 PPR repeat 6.6E-06 15 23.80 402 434
PPR PPR repeat 2.2E-07 20 25.00 408 436
PPR_2 PPR repeat family 0.00049 9 30.00 414 437
PPR_1 PPR repeat 3.8E-10 28 23.80 441 470
PPR PPR repeat 1.3E-08 24 25.00 446 471
PPR_2 PPR repeat family 1.7E-05 14 30.00 447 471
PPR_3 Pentatricopeptide repeat domain 0.012 5 25.00 468 491
PPR PPR repeat 0.016 5 25.00 514 542
PPR_3 Pentatricopeptide repeat domain 0.89 -2 25.00 520 543

559

PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
ATP13
PPR_long
PPR_2
PPR_1
PPR
ATP13
PPR_3
PPR
PPR_3
PPR_2
ATP13
PPR
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
PPR
PPR_3

References:

ATP13

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	5.7E-06	15	30.00	71	117
PPR_1	PPR repeat	0.021	4	23.80	71	81
PPR	PPR repeat	0.0017	8	25.00	72	87
PPR_3	Pentatricopeptide repeat domain	0.024	4	25.00	73	118
PPR_1	PPR repeat	0.17	1	23.80	100	109
PPR_3	Pentatricopeptide repeat domain	0.0031	6	25.00	136	167
PPR_2	PPR repeat family	0.0017	7	30.00	140	168
PPR	PPR repeat	8.6E-05	12	25.00	145	170
PPR_1	PPR repeat	0.013	4	23.80	145	167
PPR_1	PPR repeat	9E-06	14	23.80	170	198
PPR_2	PPR repeat family	4.3E-09	25	30.00	170	211
PPR_3	Pentatricopeptide repeat domain	3.2E-05	13	25.00	171	210
PPR	PPR repeat	1.7E-07	20	25.00	173	198
PPR_long	Pentacotripeptide-repeat region of PRORP	0.81	-2	27.00	194	212
PPR_3	Pentatricopeptide repeat domain	0.0022	7	25.00	242	268
PPR_1	PPR repeat	0.0019	7	23.80	243	265
PPR	PPR repeat	1.6E-06	17	25.00	243	268
PPR_2	PPR repeat family	2.9E-06	16	30.00	243	268
ATP13	Mitochondrial ATPase expression	0.72	-2	26.70	244	266
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0014	7	27.00	252	365
PPR_2	PPR repeat family	2.1E-12	36	30.00	268	317
PPR_1	PPR repeat	3.2E-05	12	23.80	269	296
PPR	PPR repeat	1E-09	27	25.00	271	298
ATP13	Mitochondrial ATPase expression	0.023	3	26.70	293	319
PPR_3	Pentatricopeptide repeat domain	0.081	2	25.00	300	320
PPR	PPR repeat	0.031	4	25.00	310	336
PPR_3	Pentatricopeptide repeat domain	0.0042	6	25.00	335	380
PPR_2	PPR repeat family	0.0047	6	30.00	341	367
ATP13	Mitochondrial ATPase expression	0.0063	5	26.70	343	368
PPR	PPR repeat	8.8E-06	15	25.00	345	372
PPR_1	PPR repeat	0.005	5	23.80	345	365
PPR_2	PPR repeat family	7.8E-14	41	30.00	370	419
PPR_1	PPR repeat	0.0019	7	23.80	371	398
PPR_3	Pentatricopeptide repeat domain	5.9E-07	18	25.00	371	417
PPR	PPR repeat	1.1E-08	24	25.00	373	403
PPR_long	Pentacotripeptide-repeat region of PRORP	6.8E-06	14	27.00	392	470
PPR_3	Pentatricopeptide repeat domain	6.6E-06	15	25.00	395	435
PPR_1	PPR repeat	6.6E-06	15	23.80	402	434
PPR	PPR repeat	2.2E-07	20	25.00	408	436
PPR_2	PPR repeat family	0.00049	9	30.00	414	437
PPR_1	PPR repeat	3.8E-10	28	23.80	441	470
PPR	PPR repeat	1.3E-08	24	25.00	446	471
PPR_2	PPR repeat family	1.7E-05	14	30.00	447	471
PPR_3	Pentatricopeptide repeat domain	0.012	5	25.00	468	491
PPR	PPR repeat	0.016	5	25.00	514	542
PPR_3	Pentatricopeptide repeat domain	0.89	-2	25.00	520	543