c2pfam

AT4G39400.1 :

Domain Description Evalue Bits GA Start End
LRRNT_2 Leucine rich repeat N-terminal domain 1.7E-09 28 20.70 36 69
LRR_4 Leucine Rich repeats (2 copies) 0.011 6 27.00 93 117
LRR_8 Leucine rich repeat 3.5E-06 16 27.00 94 134
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.12 2 27.70 98 133
LRR_4 Leucine Rich repeats (2 copies) 3.8E-06 17 27.00 99 141
LRR_6 Leucine Rich repeat 0.0046 7 23.40 122 136
LRR_4 Leucine Rich repeats (2 copies) 7.6E-06 16 27.00 123 161
LRR_1 Leucine Rich Repeat 0.0089 7 20.60 123 137
LRR_8 Leucine rich repeat 0.0018 8 27.00 146 185
LRR_6 Leucine Rich repeat 0.07 3 23.40 147 161
LRR_4 Leucine Rich repeats (2 copies) 5.7E-05 13 27.00 149 186
LRR_1 Leucine Rich Repeat 0.11 3 20.60 150 177
LRR_6 Leucine Rich repeat 0.063 3 23.40 173 187
LRR_8 Leucine rich repeat 8.3E-07 18 27.00 174 234
LRR_6 Leucine Rich repeat 0.027 5 23.40 202 214
LRR_4 Leucine Rich repeats (2 copies) 7.7E-07 19 27.00 202 238
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.0064 6 27.70 219 279
LRR_6 Leucine Rich repeat 0.035 4 23.40 222 235
LRR_1 Leucine Rich Repeat 0.031 5 20.60 223 237
LRR_8 Leucine rich repeat 1.4E-07 21 27.00 243 281
LRR_6 Leucine Rich repeat 0.004 7 23.40 245 259
LRR_4 Leucine Rich repeats (2 copies) 3.8E-08 23 27.00 246 289
LRR_1 Leucine Rich Repeat 0.0005 11 20.60 247 267
LRR_6 Leucine Rich repeat 0.1 3 23.40 268 282
LRR_1 Leucine Rich Repeat 0.11 3 20.60 271 286
LRR_8 Leucine rich repeat 0.00019 11 27.00 290 328
LRR_4 Leucine Rich repeats (2 copies) 7.9E-06 16 27.00 291 328
LRR_2 Leucine Rich Repeat 0.26 2 20.90 292 313
LRR_6 Leucine Rich repeat 0.11 3 23.40 292 306
LRR_1 Leucine Rich Repeat 0.27 2 20.60 292 312
LRR_8 Leucine rich repeat 9E-09 25 27.00 317 376
LRR_6 Leucine Rich repeat 0.13 2 23.40 317 327
LRR_1 Leucine Rich Repeat 0.19 3 20.60 318 339
LRR_6 Leucine Rich repeat 0.018 5 23.40 339 355
LRR_2 Leucine Rich Repeat 0.041 4 20.90 342 362
LRR_4 Leucine Rich repeats (2 copies) 3.3E-05 14 27.00 342 381
LRR_8 Leucine rich repeat 2.2E-07 20 27.00 342 402
LRR_8 Leucine rich repeat 1.6E-05 14 27.00 365 427
LRR_4 Leucine Rich repeats (2 copies) 0.00013 12 27.00 366 406
LRR_6 Leucine Rich repeat 0.0054 7 23.40 366 380
LRR_2 Leucine Rich Repeat 0.036 5 20.90 367 380
LRR_1 Leucine Rich Repeat 0.0012 9 20.60 367 388
LRR_2 Leucine Rich Repeat 0.092 3 20.90 391 405
LRR_6 Leucine Rich repeat 0.0031 7 23.40 391 405
LRR_1 Leucine Rich Repeat 0.12 3 20.60 392 410
LRR_6 Leucine Rich repeat 0.13 2 23.40 416 431
LRR_8 Leucine rich repeat 1.2E-07 21 27.00 417 471
LRR_1 Leucine Rich Repeat 0.00026 11 20.60 418 439
LRR_4 Leucine Rich repeats (2 copies) 2.3E-07 21 27.00 418 456
LRR_6 Leucine Rich repeat 0.43 1 23.40 439 450
LRR_8 Leucine rich repeat 4.3E-08 23 27.00 441 500
LRR_1 Leucine Rich Repeat 0.017 6 20.60 442 463
LRR_4 Leucine Rich repeats (2 copies) 0.011 6 27.00 445 472
LRR_4 Leucine Rich repeats (2 copies) 0.0093 6 27.00 489 514
LRR_6 Leucine Rich repeat 0.031 4 23.40 489 503
LRR_8 Leucine rich repeat 3.4E-10 29 27.00 489 547
LRR_1 Leucine Rich Repeat 0.021 6 20.60 490 511
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.17 1 27.70 509 586
LRR_4 Leucine Rich repeats (2 copies) 7.4E-06 16 27.00 512 551
LRR_1 Leucine Rich Repeat 0.068 4 20.60 513 533
LRR_8 Leucine rich repeat 2.1E-10 30 27.00 513 571
LRR_1 Leucine Rich Repeat 0.25 2 20.60 537 556
LRR_8 Leucine rich repeat 2.1E-06 17 27.00 649 690
LRR_4 Leucine Rich repeats (2 copies) 0.002 8 27.00 659 692
LRR_6 Leucine Rich repeat 0.0057 7 23.40 678 692
LRR_1 Leucine Rich Repeat 0.26 2 20.60 682 697
LRR_8 Leucine rich repeat 1.2E-09 28 27.00 700 738
LRR_1 Leucine Rich Repeat 0.045 5 20.60 704 722
LRR_6 Leucine Rich repeat 0.026 5 23.40 704 716
LRR_4 Leucine Rich repeats (2 copies) 4E-05 14 27.00 704 740
LRR_6 Leucine Rich repeat 0.0063 7 23.40 726 740
LRR_1 Leucine Rich Repeat 0.01 7 20.60 728 743
Pkinase Protein kinase domain 0 154 20.40 883 1152
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 150 23.10 886 1115
ABC1 ABC1 family 0.00018 11 20.60 888 911
APH Phosphotransferase enzyme family 0.3 0 22.40 919 998
APH Phosphotransferase enzyme family 0.00031 10 22.40 999 1035
LRR_5 BspA type Leucine rich repeat region (6 copies) 1 -1 27.70 1162 1182

1196

LRRNT_2
LRR_4
LRR_8
LRR_5
LRR_4
LRR_6
LRR_4
LRR_1
LRR_8
LRR_6
LRR_4
LRR_1
LRR_6
LRR_8
LRR_6
LRR_4
LRR_5
LRR_6
LRR_1
LRR_8
LRR_6
LRR_4
LRR_1
LRR_6
LRR_1
LRR_8
LRR_4
LRR_2
LRR_6
LRR_1
LRR_8
LRR_6
LRR_1
LRR_6
LRR_2
LRR_4
LRR_8
LRR_8
LRR_4
LRR_6
LRR_2
LRR_1
LRR_2
LRR_6
LRR_1
LRR_6
LRR_8
LRR_1
LRR_4
LRR_6
LRR_8
LRR_1
LRR_4
LRR_4
LRR_6
LRR_8
LRR_1
LRR_5
LRR_4
LRR_1
LRR_8
LRR_1
LRR_8
LRR_4
LRR_6
LRR_1
LRR_8
LRR_1
LRR_6
LRR_4
LRR_6
LRR_1
Pkinase
PK_Tyr_Ser-Thr
ABC1
APH
APH
LRR_5

References:

LRR_8

ABC1
1648478 ABC1, a novel yeast nuclear gene has a dual function in mitochondria: it suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J 1991;10:2023-2031.
9422602 Identification and characterization of aarF, a locus required for production of ubiquinone in Providencia stuartii and Escherichia coli and for expression of 2'-N-acetyltransferase in P. stuartii. J Bacteriol 1998;180:128-135.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

LRR_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

LRR_6

LRR_5

LRR_4

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
LRRNT_2	Leucine rich repeat N-terminal domain	1.7E-09	28	20.70	36	69
LRR_4	Leucine Rich repeats (2 copies)	0.011	6	27.00	93	117
LRR_8	Leucine rich repeat	3.5E-06	16	27.00	94	134
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.12	2	27.70	98	133
LRR_4	Leucine Rich repeats (2 copies)	3.8E-06	17	27.00	99	141
LRR_6	Leucine Rich repeat	0.0046	7	23.40	122	136
LRR_4	Leucine Rich repeats (2 copies)	7.6E-06	16	27.00	123	161
LRR_1	Leucine Rich Repeat	0.0089	7	20.60	123	137
LRR_8	Leucine rich repeat	0.0018	8	27.00	146	185
LRR_6	Leucine Rich repeat	0.07	3	23.40	147	161
LRR_4	Leucine Rich repeats (2 copies)	5.7E-05	13	27.00	149	186
LRR_1	Leucine Rich Repeat	0.11	3	20.60	150	177
LRR_6	Leucine Rich repeat	0.063	3	23.40	173	187
LRR_8	Leucine rich repeat	8.3E-07	18	27.00	174	234
LRR_6	Leucine Rich repeat	0.027	5	23.40	202	214
LRR_4	Leucine Rich repeats (2 copies)	7.7E-07	19	27.00	202	238
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.0064	6	27.70	219	279
LRR_6	Leucine Rich repeat	0.035	4	23.40	222	235
LRR_1	Leucine Rich Repeat	0.031	5	20.60	223	237
LRR_8	Leucine rich repeat	1.4E-07	21	27.00	243	281
LRR_6	Leucine Rich repeat	0.004	7	23.40	245	259
LRR_4	Leucine Rich repeats (2 copies)	3.8E-08	23	27.00	246	289
LRR_1	Leucine Rich Repeat	0.0005	11	20.60	247	267
LRR_6	Leucine Rich repeat	0.1	3	23.40	268	282
LRR_1	Leucine Rich Repeat	0.11	3	20.60	271	286
LRR_8	Leucine rich repeat	0.00019	11	27.00	290	328
LRR_4	Leucine Rich repeats (2 copies)	7.9E-06	16	27.00	291	328
LRR_2	Leucine Rich Repeat	0.26	2	20.90	292	313
LRR_6	Leucine Rich repeat	0.11	3	23.40	292	306
LRR_1	Leucine Rich Repeat	0.27	2	20.60	292	312
LRR_8	Leucine rich repeat	9E-09	25	27.00	317	376
LRR_6	Leucine Rich repeat	0.13	2	23.40	317	327
LRR_1	Leucine Rich Repeat	0.19	3	20.60	318	339
LRR_6	Leucine Rich repeat	0.018	5	23.40	339	355
LRR_2	Leucine Rich Repeat	0.041	4	20.90	342	362
LRR_4	Leucine Rich repeats (2 copies)	3.3E-05	14	27.00	342	381
LRR_8	Leucine rich repeat	2.2E-07	20	27.00	342	402
LRR_8	Leucine rich repeat	1.6E-05	14	27.00	365	427
LRR_4	Leucine Rich repeats (2 copies)	0.00013	12	27.00	366	406
LRR_6	Leucine Rich repeat	0.0054	7	23.40	366	380
LRR_2	Leucine Rich Repeat	0.036	5	20.90	367	380
LRR_1	Leucine Rich Repeat	0.0012	9	20.60	367	388
LRR_2	Leucine Rich Repeat	0.092	3	20.90	391	405
LRR_6	Leucine Rich repeat	0.0031	7	23.40	391	405
LRR_1	Leucine Rich Repeat	0.12	3	20.60	392	410
LRR_6	Leucine Rich repeat	0.13	2	23.40	416	431
LRR_8	Leucine rich repeat	1.2E-07	21	27.00	417	471
LRR_1	Leucine Rich Repeat	0.00026	11	20.60	418	439
LRR_4	Leucine Rich repeats (2 copies)	2.3E-07	21	27.00	418	456
LRR_6	Leucine Rich repeat	0.43	1	23.40	439	450
LRR_8	Leucine rich repeat	4.3E-08	23	27.00	441	500
LRR_1	Leucine Rich Repeat	0.017	6	20.60	442	463
LRR_4	Leucine Rich repeats (2 copies)	0.011	6	27.00	445	472
LRR_4	Leucine Rich repeats (2 copies)	0.0093	6	27.00	489	514
LRR_6	Leucine Rich repeat	0.031	4	23.40	489	503
LRR_8	Leucine rich repeat	3.4E-10	29	27.00	489	547
LRR_1	Leucine Rich Repeat	0.021	6	20.60	490	511
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.17	1	27.70	509	586
LRR_4	Leucine Rich repeats (2 copies)	7.4E-06	16	27.00	512	551
LRR_1	Leucine Rich Repeat	0.068	4	20.60	513	533
LRR_8	Leucine rich repeat	2.1E-10	30	27.00	513	571
LRR_1	Leucine Rich Repeat	0.25	2	20.60	537	556
LRR_8	Leucine rich repeat	2.1E-06	17	27.00	649	690
LRR_4	Leucine Rich repeats (2 copies)	0.002	8	27.00	659	692
LRR_6	Leucine Rich repeat	0.0057	7	23.40	678	692
LRR_1	Leucine Rich Repeat	0.26	2	20.60	682	697
LRR_8	Leucine rich repeat	1.2E-09	28	27.00	700	738
LRR_1	Leucine Rich Repeat	0.045	5	20.60	704	722
LRR_6	Leucine Rich repeat	0.026	5	23.40	704	716
LRR_4	Leucine Rich repeats (2 copies)	4E-05	14	27.00	704	740
LRR_6	Leucine Rich repeat	0.0063	7	23.40	726	740
LRR_1	Leucine Rich Repeat	0.01	7	20.60	728	743
Pkinase	Protein kinase domain	0	154	20.40	883	1152
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	150	23.10	886	1115
ABC1	ABC1 family	0.00018	11	20.60	888	911
APH	Phosphotransferase enzyme family	0.3	0	22.40	919	998
APH	Phosphotransferase enzyme family	0.00031	10	22.40	999	1035
LRR_5	BspA type Leucine rich repeat region (6 copies)	1	-1	27.70	1162	1182