c2pfam

AT4G39620.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.51 0 25.00 90 109
PPR PPR repeat 0.72 -1 25.00 107 121
PPR_2 PPR repeat family 0.018 4 30.00 107 126
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.21 -1 21.90 129 154
PPR_2 PPR repeat family 1.8E-12 36 30.00 131 177
PPR_1 PPR repeat 0.00094 8 23.80 131 160
PPR PPR repeat 1E-08 24 25.00 135 164
PPR_3 Pentatricopeptide repeat domain 1.7E-08 24 25.00 136 177
PPR_long Pentacotripeptide-repeat region of PRORP 2.5E-10 29 27.00 142 276
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.089 1 21.90 145 176
PPR_3 Pentatricopeptide repeat domain 1E-13 40 25.00 155 218
PPR_1 PPR repeat 0.00048 9 23.80 163 176
PPR_2 PPR repeat family 1.2E-11 34 30.00 166 219
PPR PPR repeat 0.037 4 25.00 170 189
PPR_1 PPR repeat 2.1E-09 26 23.80 204 226
PPR_3 Pentatricopeptide repeat domain 4.8E-12 35 25.00 204 256
PPR_2 PPR repeat family 1.1E-14 43 30.00 206 254
PPR PPR repeat 3.5E-07 19 25.00 209 234
PPR_3 Pentatricopeptide repeat domain 1.9E-14 43 25.00 230 290
PPR_1 PPR repeat 2.6E-07 19 23.80 239 270
PPR_2 PPR repeat family 4.5E-14 42 30.00 241 288
PPR PPR repeat 1.7E-08 24 25.00 244 274
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.029 2 21.90 262 291
PPR_1 PPR repeat 5.1E-07 18 23.80 273 291
PPR_2 PPR repeat family 3.2E-09 26 30.00 276 320
PPR PPR repeat 2.1E-06 17 25.00 279 306
PPR_long Pentacotripeptide-repeat region of PRORP 3.3E-07 19 27.00 292 397
PPR_3 Pentatricopeptide repeat domain 0.0017 7 25.00 297 325
PPR_1 PPR repeat 1.7E-05 14 23.80 310 339
PPR_3 Pentatricopeptide repeat domain 7.3E-05 12 25.00 313 359
PPR PPR repeat 3E-09 26 25.00 315 342
PPR_2 PPR repeat family 1.5E-07 21 30.00 315 355
PPR_3 Pentatricopeptide repeat domain 0.00045 9 25.00 335 377
PPR_1 PPR repeat 7.1E-05 12 23.80 344 373
PPR PPR repeat 4.6E-05 13 25.00 349 374
TPR_12 Tetratricopeptide repeat 2E-05 14 30.10 365 406
PPR_3 Pentatricopeptide repeat domain 0.0019 7 25.00 370 429
PPR_1 PPR repeat 0.00062 9 23.80 385 406
PPR PPR repeat 1.4E-07 21 25.00 385 407
PPR_2 PPR repeat family 1.9E-09 27 30.00 385 428
PPR_long Pentacotripeptide-repeat region of PRORP 0.00025 9 27.00 401 463
PPR_3 Pentatricopeptide repeat domain 9.6E-06 15 25.00 404 464
PPR_1 PPR repeat 0.41 -1 23.80 414 422
PPR PPR repeat 0.007 6 25.00 422 449
PPR_2 PPR repeat family 0.008 6 30.00 427 453
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0015 7 21.90 436 466

563

PPR
PPR
PPR_2
ECSIT
PPR_2
PPR_1
PPR
PPR_3
PPR_long
ECSIT
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
ECSIT
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR
TPR_12
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
ECSIT

References:

TPR_12

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.51	0	25.00	90	109
PPR	PPR repeat	0.72	-1	25.00	107	121
PPR_2	PPR repeat family	0.018	4	30.00	107	126
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.21	-1	21.90	129	154
PPR_2	PPR repeat family	1.8E-12	36	30.00	131	177
PPR_1	PPR repeat	0.00094	8	23.80	131	160
PPR	PPR repeat	1E-08	24	25.00	135	164
PPR_3	Pentatricopeptide repeat domain	1.7E-08	24	25.00	136	177
PPR_long	Pentacotripeptide-repeat region of PRORP	2.5E-10	29	27.00	142	276
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.089	1	21.90	145	176
PPR_3	Pentatricopeptide repeat domain	1E-13	40	25.00	155	218
PPR_1	PPR repeat	0.00048	9	23.80	163	176
PPR_2	PPR repeat family	1.2E-11	34	30.00	166	219
PPR	PPR repeat	0.037	4	25.00	170	189
PPR_1	PPR repeat	2.1E-09	26	23.80	204	226
PPR_3	Pentatricopeptide repeat domain	4.8E-12	35	25.00	204	256
PPR_2	PPR repeat family	1.1E-14	43	30.00	206	254
PPR	PPR repeat	3.5E-07	19	25.00	209	234
PPR_3	Pentatricopeptide repeat domain	1.9E-14	43	25.00	230	290
PPR_1	PPR repeat	2.6E-07	19	23.80	239	270
PPR_2	PPR repeat family	4.5E-14	42	30.00	241	288
PPR	PPR repeat	1.7E-08	24	25.00	244	274
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.029	2	21.90	262	291
PPR_1	PPR repeat	5.1E-07	18	23.80	273	291
PPR_2	PPR repeat family	3.2E-09	26	30.00	276	320
PPR	PPR repeat	2.1E-06	17	25.00	279	306
PPR_long	Pentacotripeptide-repeat region of PRORP	3.3E-07	19	27.00	292	397
PPR_3	Pentatricopeptide repeat domain	0.0017	7	25.00	297	325
PPR_1	PPR repeat	1.7E-05	14	23.80	310	339
PPR_3	Pentatricopeptide repeat domain	7.3E-05	12	25.00	313	359
PPR	PPR repeat	3E-09	26	25.00	315	342
PPR_2	PPR repeat family	1.5E-07	21	30.00	315	355
PPR_3	Pentatricopeptide repeat domain	0.00045	9	25.00	335	377
PPR_1	PPR repeat	7.1E-05	12	23.80	344	373
PPR	PPR repeat	4.6E-05	13	25.00	349	374
TPR_12	Tetratricopeptide repeat	2E-05	14	30.10	365	406
PPR_3	Pentatricopeptide repeat domain	0.0019	7	25.00	370	429
PPR_1	PPR repeat	0.00062	9	23.80	385	406
PPR	PPR repeat	1.4E-07	21	25.00	385	407
PPR_2	PPR repeat family	1.9E-09	27	30.00	385	428
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00025	9	27.00	401	463
PPR_3	Pentatricopeptide repeat domain	9.6E-06	15	25.00	404	464
PPR_1	PPR repeat	0.41	-1	23.80	414	422
PPR	PPR repeat	0.007	6	25.00	422	449
PPR_2	PPR repeat family	0.008	6	30.00	427	453
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0015	7	21.90	436	466