c2pfam

AT4G39940.1 :

Domain Description Evalue Bits GA Start End
T2SSE Type II/IV secretion system protein 0.00013 12 24.90 107 142
AAA_30 AAA domain 7.7E-05 13 27.00 108 143
Rad17 Rad17 cell cycle checkpoint protein 7.3E-05 14 19.70 108 171
SWI2_SNF2 SWI2/SNF2 ATPase 0.00011 13 26.70 111 146
AAA_29 P-loop containing region of AAA domain 2.1E-06 18 27.00 111 143
AAA_16 AAA ATPase domain 3.3E-06 18 32.60 112 156
Zeta_toxin Zeta toxin 0.00022 11 20.10 112 156
ABC_tran ABC transporter 2.4E-06 19 23.10 113 184
APS_kinase Adenylylsulphate kinase 0 244 20.70 114 267
AAA_25 AAA domain 0.00066 10 27.00 114 144
TIP49 TIP49 C-terminus 0.0005 10 23.80 115 142
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 3.6E-05 14 23.10 115 144
NACHT NACHT domain 0.00013 13 20.40 117 141
AAA_33 AAA domain 7.7E-08 23 27.00 117 229
SRP54 SRP54-type protein, GTPase domain 0.00028 11 20.50 117 167
AAA_22 AAA domain 0.00024 12 27.00 118 165
PRK Phosphoribulokinase / Uridine kinase family 0.00015 12 20.60 118 151
AAA_18 AAA domain 1.5E-07 23 29.40 118 166
IstB_IS21 IstB-like ATP binding protein 0.00011 13 24.10 118 147
KTI12 Chromatin associated protein KTI12 8.3E-06 16 21.60 118 174
RNA_helicase RNA helicase 0.00012 13 21.50 118 143
ParA ParA/MinD ATPase like 0.00012 12 21.10 119 172
AAA_23 AAA domain 4.4E-06 18 27.00 119 158
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 7.8E-07 20 21.70 120 159
MipZ ATPase MipZ 0.00033 11 20.70 124 166

293

T2SSE
AAA_30
Rad17
SWI2_SNF2
AAA_29
AAA_16
Zeta_toxin
ABC_tran
APS_kinase
AAA_25
TIP49
MeaB
NACHT
AAA_33
SRP54
AAA_22
PRK
AAA_18
IstB_IS21
KTI12
RNA_helicase
ParA
AAA_23
CbiA
MipZ

References:

IstB_IS21

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

T2SSE

KTI12
15772087 Physical and functional interaction between Elongator and the chromatin-associated Kti12 protein. J Biol Chem 2005;280:19454-19460.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

MipZ
16839883 MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter. Cell. 2006;126:147-162.

MeaB

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

AAA_33

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

ParA
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.
15728363 The eukaryotic P loop NTPase Nbp35: an essential component of the cytosolic and nuclear iron-sulfur protein assembly machinery. Proc Natl Acad Sci U S A. 2005;102:3266-3271.

AAA_25

AAA_23

AAA_22

SWI2_SNF2

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
T2SSE	Type II/IV secretion system protein	0.00013	12	24.90	107	142
AAA_30	AAA domain	7.7E-05	13	27.00	108	143
Rad17	Rad17 cell cycle checkpoint protein	7.3E-05	14	19.70	108	171
SWI2_SNF2	SWI2/SNF2 ATPase	0.00011	13	26.70	111	146
AAA_29	P-loop containing region of AAA domain	2.1E-06	18	27.00	111	143
AAA_16	AAA ATPase domain	3.3E-06	18	32.60	112	156
Zeta_toxin	Zeta toxin	0.00022	11	20.10	112	156
ABC_tran	ABC transporter	2.4E-06	19	23.10	113	184
APS_kinase	Adenylylsulphate kinase	0	244	20.70	114	267
AAA_25	AAA domain	0.00066	10	27.00	114	144
TIP49	TIP49 C-terminus	0.0005	10	23.80	115	142
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	3.6E-05	14	23.10	115	144
NACHT	NACHT domain	0.00013	13	20.40	117	141
AAA_33	AAA domain	7.7E-08	23	27.00	117	229
SRP54	SRP54-type protein, GTPase domain	0.00028	11	20.50	117	167
AAA_22	AAA domain	0.00024	12	27.00	118	165
PRK	Phosphoribulokinase / Uridine kinase family	0.00015	12	20.60	118	151
AAA_18	AAA domain	1.5E-07	23	29.40	118	166
IstB_IS21	IstB-like ATP binding protein	0.00011	13	24.10	118	147
KTI12	Chromatin associated protein KTI12	8.3E-06	16	21.60	118	174
RNA_helicase	RNA helicase	0.00012	13	21.50	118	143
ParA	ParA/MinD ATPase like	0.00012	12	21.10	119	172
AAA_23	AAA domain	4.4E-06	18	27.00	119	158
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	7.8E-07	20	21.70	120	159
MipZ	ATPase MipZ	0.00033	11	20.70	124	166