c2pfam

AT4G39952.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.98 0 25.00 58 88
PPR PPR repeat 0.17 3 25.00 65 88
PPR_2 PPR repeat family 6.3E-07 20 30.00 89 136
PPR_1 PPR repeat 0.19 2 23.80 89 105
PPR_3 Pentatricopeptide repeat domain 0.66 1 25.00 89 109
TPR_1 Tetratricopeptide repeat 0.6 1 20.40 92 108
PPR PPR repeat 0.00023 12 25.00 92 120
PPR PPR repeat 0.00044 11 25.00 171 191
PPR_2 PPR repeat family 0.063 4 30.00 171 191
PPR_1 PPR repeat 0.016 5 23.80 173 187
PPR_2 PPR repeat family 4.7E-06 17 30.00 190 240
PPR_1 PPR repeat 0.14 2 23.80 191 206
PPR_3 Pentatricopeptide repeat domain 0.68 0 25.00 191 208
PPR PPR repeat 1.3E-06 19 25.00 193 222
PPR PPR repeat 0.0044 8 25.00 269 291
PPR_1 PPR repeat 4.7E-05 13 23.80 295 322
PPR_2 PPR repeat family 1E-10 32 30.00 295 342
PPR_3 Pentatricopeptide repeat domain 0.0048 7 25.00 296 343
PPR PPR repeat 1.7E-09 28 25.00 297 326
PPR_long Pentacotripeptide-repeat region of PRORP 0.065 3 27.00 299 329
PPR_3 Pentatricopeptide repeat domain 0.32 2 25.00 364 396
PPR_2 PPR repeat family 8.4E-05 13 30.00 365 396
PPR PPR repeat 5.5E-06 17 25.00 368 396
PPR_1 PPR repeat 0.0018 8 23.80 370 390
PPR_2 PPR repeat family 5.6E-08 23 30.00 400 444
PPR PPR repeat 6.3E-08 23 25.00 400 429
PPR_long Pentacotripeptide-repeat region of PRORP 0.28 1 27.00 403 447
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0099 5 19.90 403 519
PPR_3 Pentatricopeptide repeat domain 0.16 3 25.00 420 480
PPR_2 PPR repeat family 0.00057 10 30.00 469 493
PPR PPR repeat 5.6E-05 14 25.00 471 493
PPR_1 PPR repeat 0.0022 8 23.80 472 493
PPR_3 Pentatricopeptide repeat domain 0.53 1 25.00 472 508
PPR_3 Pentatricopeptide repeat domain 3E-05 14 25.00 496 545
PPR_1 PPR repeat 0.00014 12 23.80 497 525
PPR_2 PPR repeat family 9.2E-15 45 30.00 497 544
PPR PPR repeat 8.5E-10 29 25.00 499 529
PPR_long Pentacotripeptide-repeat region of PRORP 6.7E-05 13 27.00 500 561
TPR_1 Tetratricopeptide repeat 0.14 3 20.40 500 523
TPR_14 Tetratricopeptide repeat 0.013 7 23.50 501 541
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain 0.0068 7 22.80 504 537
PPR_3 Pentatricopeptide repeat domain 0.00022 12 25.00 520 561
TPR_19 Tetratricopeptide repeat 0.36 2 25.00 567 596
TPR_14 Tetratricopeptide repeat 0.24 3 23.50 572 596
PPR PPR repeat 0.00016 12 25.00 573 592
PPR_2 PPR repeat family 0.058 4 30.00 573 592
PPR_1 PPR repeat 0.0083 6 23.80 573 592
TPR_2 Tetratricopeptide repeat 0.55 1 22.40 577 592
PPR_3 Pentatricopeptide repeat domain 6.1E-07 20 25.00 591 644
PPR_2 PPR repeat family 8.3E-14 42 30.00 597 644
PPR_1 PPR repeat 2.4E-09 27 23.80 598 626
PPR PPR repeat 1.4E-11 34 25.00 600 629
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain 0.055 4 22.80 610 638
PPR_long Pentacotripeptide-repeat region of PRORP 5.2E-08 23 27.00 612 695
TPR_19 Tetratricopeptide repeat 0.28 2 25.00 613 627
PPR_1 PPR repeat 0.86 0 23.80 630 660
PPR PPR repeat 2.8E-05 15 25.00 636 663
PPR_2 PPR repeat family 3.6E-06 18 30.00 637 679
PPR_3 Pentatricopeptide repeat domain 0.00018 12 25.00 656 695
PPR_1 PPR repeat 5.4E-05 13 23.80 665 690
PPR PPR repeat 0.00013 13 25.00 671 695
PPR_2 PPR repeat family 0.059 4 30.00 672 695
TPR_14 Tetratricopeptide repeat 0.53 2 23.50 672 689
TPR_10 Tetratricopeptide repeat 0.49 1 27.50 672 689
TPR_12 Tetratricopeptide repeat 0.89 0 30.10 674 690
TPR_4 Tetratricopeptide repeat 0.23 3 22.00 674 690
TPR_19 Tetratricopeptide repeat 0.2 3 25.00 675 693
PPR_2 PPR repeat family 0.03 5 30.00 699 723
PPR PPR repeat 0.023 6 25.00 702 723
TPR_14 Tetratricopeptide repeat 2.5E-05 15 23.50 704 742
TPR_2 Tetratricopeptide repeat 0.6 1 22.40 711 734
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0015 8 19.90 711 754
TPR_16 Tetratricopeptide repeat 0.00015 13 32.70 714 755
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0022 9 27.20 715 756
TPR_19 Tetratricopeptide repeat 3.1E-05 15 25.00 721 756
TPR_17 Tetratricopeptide repeat 3.7E-05 14 24.40 724 755
TPR_12 Tetratricopeptide repeat 0.0057 7 30.10 737 756
TPR_2 Tetratricopeptide repeat 0.005 8 22.40 737 756
TPR_1 Tetratricopeptide repeat 0.0098 6 20.40 738 756
TPR_10 Tetratricopeptide repeat 0.00024 11 27.50 738 756
PPR_3 Pentatricopeptide repeat domain 0.8 0 25.00 738 766
TPR_4 Tetratricopeptide repeat 0.0029 9 22.00 738 757
TPR_14 Tetratricopeptide repeat 0.076 5 23.50 739 757
TPR_7 Tetratricopeptide repeat 0.0011 10 27.90 740 759
PPR PPR repeat 6.7E-05 14 25.00 740 766
PPR_2 PPR repeat family 0.064 4 30.00 743 766
PPR_1 PPR repeat 0.75 0 23.80 748 762

775

PPR_3
PPR
PPR_2
PPR_1
PPR_3
TPR_1
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
ChAPs
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_1
TPR_14
Ribonuc_red_lgN
PPR_3
TPR_19
TPR_14
PPR
PPR_2
PPR_1
TPR_2
PPR_3
PPR_2
PPR_1
PPR
Ribonuc_red_lgN
PPR_long
TPR_19
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
TPR_14
TPR_10
TPR_12
TPR_4
TPR_19
PPR_2
PPR
TPR_14
TPR_2
ChAPs
TPR_16
ANAPC3
TPR_19
TPR_17
TPR_12
TPR_2
TPR_1
TPR_10
PPR_3
TPR_4
TPR_14
TPR_7
PPR
PPR_2
PPR_1

References:

ChAPs
16498409 Arf1p, Chs5p and the ChAPs are required for export of specialized cargo from the Golgi. EMBO J. 2006;25:943-954.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

TPR_4

TPR_16

ANAPC3

Ribonuc_red_lgN
8052308 Structure of ribonucleotide reductase protein R1. Nature 1994;370:533-539.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_7

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.98	0	25.00	58	88
PPR	PPR repeat	0.17	3	25.00	65	88
PPR_2	PPR repeat family	6.3E-07	20	30.00	89	136
PPR_1	PPR repeat	0.19	2	23.80	89	105
PPR_3	Pentatricopeptide repeat domain	0.66	1	25.00	89	109
TPR_1	Tetratricopeptide repeat	0.6	1	20.40	92	108
PPR	PPR repeat	0.00023	12	25.00	92	120
PPR	PPR repeat	0.00044	11	25.00	171	191
PPR_2	PPR repeat family	0.063	4	30.00	171	191
PPR_1	PPR repeat	0.016	5	23.80	173	187
PPR_2	PPR repeat family	4.7E-06	17	30.00	190	240
PPR_1	PPR repeat	0.14	2	23.80	191	206
PPR_3	Pentatricopeptide repeat domain	0.68	0	25.00	191	208
PPR	PPR repeat	1.3E-06	19	25.00	193	222
PPR	PPR repeat	0.0044	8	25.00	269	291
PPR_1	PPR repeat	4.7E-05	13	23.80	295	322
PPR_2	PPR repeat family	1E-10	32	30.00	295	342
PPR_3	Pentatricopeptide repeat domain	0.0048	7	25.00	296	343
PPR	PPR repeat	1.7E-09	28	25.00	297	326
PPR_long	Pentacotripeptide-repeat region of PRORP	0.065	3	27.00	299	329
PPR_3	Pentatricopeptide repeat domain	0.32	2	25.00	364	396
PPR_2	PPR repeat family	8.4E-05	13	30.00	365	396
PPR	PPR repeat	5.5E-06	17	25.00	368	396
PPR_1	PPR repeat	0.0018	8	23.80	370	390
PPR_2	PPR repeat family	5.6E-08	23	30.00	400	444
PPR	PPR repeat	6.3E-08	23	25.00	400	429
PPR_long	Pentacotripeptide-repeat region of PRORP	0.28	1	27.00	403	447
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0099	5	19.90	403	519
PPR_3	Pentatricopeptide repeat domain	0.16	3	25.00	420	480
PPR_2	PPR repeat family	0.00057	10	30.00	469	493
PPR	PPR repeat	5.6E-05	14	25.00	471	493
PPR_1	PPR repeat	0.0022	8	23.80	472	493
PPR_3	Pentatricopeptide repeat domain	0.53	1	25.00	472	508
PPR_3	Pentatricopeptide repeat domain	3E-05	14	25.00	496	545
PPR_1	PPR repeat	0.00014	12	23.80	497	525
PPR_2	PPR repeat family	9.2E-15	45	30.00	497	544
PPR	PPR repeat	8.5E-10	29	25.00	499	529
PPR_long	Pentacotripeptide-repeat region of PRORP	6.7E-05	13	27.00	500	561
TPR_1	Tetratricopeptide repeat	0.14	3	20.40	500	523
TPR_14	Tetratricopeptide repeat	0.013	7	23.50	501	541
Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	0.0068	7	22.80	504	537
PPR_3	Pentatricopeptide repeat domain	0.00022	12	25.00	520	561
TPR_19	Tetratricopeptide repeat	0.36	2	25.00	567	596
TPR_14	Tetratricopeptide repeat	0.24	3	23.50	572	596
PPR	PPR repeat	0.00016	12	25.00	573	592
PPR_2	PPR repeat family	0.058	4	30.00	573	592
PPR_1	PPR repeat	0.0083	6	23.80	573	592
TPR_2	Tetratricopeptide repeat	0.55	1	22.40	577	592
PPR_3	Pentatricopeptide repeat domain	6.1E-07	20	25.00	591	644
PPR_2	PPR repeat family	8.3E-14	42	30.00	597	644
PPR_1	PPR repeat	2.4E-09	27	23.80	598	626
PPR	PPR repeat	1.4E-11	34	25.00	600	629
Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	0.055	4	22.80	610	638
PPR_long	Pentacotripeptide-repeat region of PRORP	5.2E-08	23	27.00	612	695
TPR_19	Tetratricopeptide repeat	0.28	2	25.00	613	627
PPR_1	PPR repeat	0.86	0	23.80	630	660
PPR	PPR repeat	2.8E-05	15	25.00	636	663
PPR_2	PPR repeat family	3.6E-06	18	30.00	637	679
PPR_3	Pentatricopeptide repeat domain	0.00018	12	25.00	656	695
PPR_1	PPR repeat	5.4E-05	13	23.80	665	690
PPR	PPR repeat	0.00013	13	25.00	671	695
PPR_2	PPR repeat family	0.059	4	30.00	672	695
TPR_14	Tetratricopeptide repeat	0.53	2	23.50	672	689
TPR_10	Tetratricopeptide repeat	0.49	1	27.50	672	689
TPR_12	Tetratricopeptide repeat	0.89	0	30.10	674	690
TPR_4	Tetratricopeptide repeat	0.23	3	22.00	674	690
TPR_19	Tetratricopeptide repeat	0.2	3	25.00	675	693
PPR_2	PPR repeat family	0.03	5	30.00	699	723
PPR	PPR repeat	0.023	6	25.00	702	723
TPR_14	Tetratricopeptide repeat	2.5E-05	15	23.50	704	742
TPR_2	Tetratricopeptide repeat	0.6	1	22.40	711	734
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0015	8	19.90	711	754
TPR_16	Tetratricopeptide repeat	0.00015	13	32.70	714	755
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0022	9	27.20	715	756
TPR_19	Tetratricopeptide repeat	3.1E-05	15	25.00	721	756
TPR_17	Tetratricopeptide repeat	3.7E-05	14	24.40	724	755
TPR_12	Tetratricopeptide repeat	0.0057	7	30.10	737	756
TPR_2	Tetratricopeptide repeat	0.005	8	22.40	737	756
TPR_1	Tetratricopeptide repeat	0.0098	6	20.40	738	756
TPR_10	Tetratricopeptide repeat	0.00024	11	27.50	738	756
PPR_3	Pentatricopeptide repeat domain	0.8	0	25.00	738	766
TPR_4	Tetratricopeptide repeat	0.0029	9	22.00	738	757
TPR_14	Tetratricopeptide repeat	0.076	5	23.50	739	757
TPR_7	Tetratricopeptide repeat	0.0011	10	27.90	740	759
PPR	PPR repeat	6.7E-05	14	25.00	740	766
PPR_2	PPR repeat family	0.064	4	30.00	743	766
PPR_1	PPR repeat	0.75	0	23.80	748	762