c2pfam

AT4G21070.1 :

Domain Description Evalue Bits GA Start End
zf-HC5HC2H PHD-like zinc-binding domain 0.59 1 29.10 5 39
zf-RING_6 zf-RING of BARD1-type protein 4E-08 23 35.00 8 71
zf-Nse Zinc-finger of the MIZ type in Nse subunit 6.7E-05 13 20.70 12 53
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 5.9E-11 32 27.00 13 58
zf-RING_10 zinc RING finger of MSL2 3.5E-07 21 31.00 14 78
zf-RING_2 Ring finger domain 2.2E-10 31 27.30 15 54
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.4E-12 36 27.00 15 53
zf-RING_5 zinc-RING finger domain 3.3E-09 27 27.90 15 54
zf-C3HC4_4 zinc finger of C3HC4-type, RING 1E-08 26 30.00 16 53
zf-RING_UBOX RING-type zinc-finger 1.3E-09 28 25.20 16 51
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.4E-10 31 21.00 16 53
zf-rbx1 RING-H2 zinc finger domain 3.9E-06 18 31.00 16 54
zf-HC5HC2H_2 PHD-zinc-finger like domain 3E-10 31 27.00 600 661
zf-HC5HC2H PHD-like zinc-binding domain 1.5E-12 38 29.10 602 661
zf-RING_2 Ring finger domain 0.37 2 27.30 633 679
PTCB-BRCT twin BRCT domain 9.2E-06 16 21.40 733 794
BRCT BRCA1 C Terminus (BRCT) domain 1.6E-11 35 21.20 734 806
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 1.7E-07 22 27.30 747 817
RTT107_BRCT_5 Regulator of Ty1 transposition protein 107 BRCT domain 5.3E-09 26 27.00 753 818
LIG3_BRCT DNA ligase 3 BRCT domain 0.044 5 27.00 762 809
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 4.1E-11 34 27.30 841 938
BRCT BRCA1 C Terminus (BRCT) domain 2.9E-06 18 21.20 841 932
LIG3_BRCT DNA ligase 3 BRCT domain 0.001 10 27.00 843 933

941

zf-HC5HC2H
zf-RING_6
zf-Nse
zf-C3HC4_3
zf-RING_10
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-rbx1
zf-HC5HC2H_2
zf-HC5HC2H
zf-RING_2
PTCB-BRCT
BRCT
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_2
BRCT
LIG3_BRCT

References:

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

LIG3_BRCT

RTT107_BRCT_5

zf-HC5HC2H_2

zf-HC5HC2H

BRCT
8673121 BRCA1 protein products ...Functional motifs... Nature Genet 1996;13:266-268.
15501676 Interactions between BRCT repeats and phosphoproteins: tangled up in two. Trends Biochem Sci. 2004;29:579-585.
11573086 Crystal structure of the BRCT repeat region from the breast cancer-associated protein BRCA1. Nat Struct Biol. 2001;8:838-842.
15133503 Structural basis of phosphopeptide recognition by the BRCT domain of BRCA1. Nat Struct Mol Biol. 2004;11:519-525.
14534301 Detection of protein folding defects caused by BRCA1-BRCT truncation and missense mutations. J Biol Chem. 2003;278:53007-53016.

zf-RING_UBOX

BRCT_2

zf-RING_6

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_10

zf-C3HC4_3

zf-C3HC4_2

PTCB-BRCT

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
zf-HC5HC2H	PHD-like zinc-binding domain	0.59	1	29.10	5	39
zf-RING_6	zf-RING of BARD1-type protein	4E-08	23	35.00	8	71
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	6.7E-05	13	20.70	12	53
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	5.9E-11	32	27.00	13	58
zf-RING_10	zinc RING finger of MSL2	3.5E-07	21	31.00	14	78
zf-RING_2	Ring finger domain	2.2E-10	31	27.30	15	54
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	5.4E-12	36	27.00	15	53
zf-RING_5	zinc-RING finger domain	3.3E-09	27	27.90	15	54
zf-C3HC4_4	zinc finger of C3HC4-type, RING	1E-08	26	30.00	16	53
zf-RING_UBOX	RING-type zinc-finger	1.3E-09	28	25.20	16	51
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.4E-10	31	21.00	16	53
zf-rbx1	RING-H2 zinc finger domain	3.9E-06	18	31.00	16	54
zf-HC5HC2H_2	PHD-zinc-finger like domain	3E-10	31	27.00	600	661
zf-HC5HC2H	PHD-like zinc-binding domain	1.5E-12	38	29.10	602	661
zf-RING_2	Ring finger domain	0.37	2	27.30	633	679
PTCB-BRCT	twin BRCT domain	9.2E-06	16	21.40	733	794
BRCT	BRCA1 C Terminus (BRCT) domain	1.6E-11	35	21.20	734	806
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	1.7E-07	22	27.30	747	817
RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	5.3E-09	26	27.00	753	818
LIG3_BRCT	DNA ligase 3 BRCT domain	0.044	5	27.00	762	809
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	4.1E-11	34	27.30	841	938
BRCT	BRCA1 C Terminus (BRCT) domain	2.9E-06	18	21.20	841	932
LIG3_BRCT	DNA ligase 3 BRCT domain	0.001	10	27.00	843	933