c2pfam

AT5G01110.1 :

Domain Description Evalue Bits GA Start End
SR-25 Nuclear RNA-splicing-associated protein 0.0042 7 55.00 28 52
PPR PPR repeat 2.6E-05 15 25.00 116 142
PPR_2 PPR repeat family 0.013 6 30.00 117 143
PPR_1 PPR repeat 0.64 0 23.80 117 133
TPR_7 Tetratricopeptide repeat 1 0 27.90 117 140
TPR_16 Tetratricopeptide repeat 0.12 3 32.70 119 146
AEP1 ATPase expression protein 1 0.054 3 27.00 164 202
PPR_2 PPR repeat family 0.033 5 30.00 167 197
PPR PPR repeat 0.001 10 25.00 168 196
PPR_3 Pentatricopeptide repeat domain 0.00029 11 25.00 170 209
TPR_16 Tetratricopeptide repeat 0.07 4 32.70 171 193
PPR_2 PPR repeat family 2.7E-12 37 30.00 201 247
PPR PPR repeat 2.1E-05 15 25.00 203 231
PPR_long Pentacotripeptide-repeat region of PRORP 6.7E-13 39 27.00 218 355
PPR_3 Pentatricopeptide repeat domain 3.7E-11 33 25.00 222 280
HTH_56 Cch helix turn helix domain 0.41 1 26.20 226 266
PPR_1 PPR repeat 2E-07 21 23.80 230 253
PPR_2 PPR repeat family 1.1E-13 41 30.00 234 280
PPR PPR repeat 1.7E-06 18 25.00 236 266
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.1 2 21.90 249 280
ATP13 Mitochondrial ATPase expression 0.0036 7 26.70 258 295
PPR_1 PPR repeat 2E-13 40 23.80 264 296
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.071 2 25.90 265 331
PPR_2 PPR repeat family 8.3E-22 67 30.00 268 317
PPR PPR repeat 6E-12 35 25.00 271 301
PPR_3 Pentatricopeptide repeat domain 3.4E-11 33 25.00 293 347
PPR_1 PPR repeat 4.8E-15 45 23.80 299 331
PPR_2 PPR repeat family 4E-19 59 30.00 303 352
HTH_56 Cch helix turn helix domain 0.7 0 26.20 305 336
PPR PPR repeat 2.5E-13 40 25.00 306 336
TPR_2 Tetratricopeptide repeat 0.02 6 22.40 315 332
TPR_16 Tetratricopeptide repeat 0.046 5 32.70 317 340
Toxin_YhaV Toxin with endonuclease activity YhaV 0.046 4 22.80 317 341
TPR_7 Tetratricopeptide repeat 0.39 1 27.90 319 334
PPR_1 PPR repeat 7.1E-09 26 23.80 335 367
PPR PPR repeat 1.9E-05 15 25.00 342 370
PPR_2 PPR repeat family 9.7E-08 22 30.00 346 382
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-07 21 27.00 359 469
PPR_3 Pentatricopeptide repeat domain 1.2E-08 25 25.00 361 420
RabGAP-TBC Rab-GTPase-TBC domain 0.039 4 24.50 361 399
ATP13 Mitochondrial ATPase expression 0.17 2 26.70 367 401
PPR_1 PPR repeat 1.2E-05 15 23.80 370 396
PPR_2 PPR repeat family 4.8E-10 30 30.00 373 419
PPR PPR repeat 2.6E-07 21 25.00 376 406
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0067 5 25.90 387 441
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.79 -1 21.90 399 425
PPR_3 Pentatricopeptide repeat domain 4.4E-07 20 25.00 404 453
PPR_1 PPR repeat 8.9E-13 38 23.80 405 436
ATP13 Mitochondrial ATPase expression 0.43 1 26.70 405 437
PPR_2 PPR repeat family 2.8E-19 59 30.00 408 457
PPR PPR repeat 5.2E-10 29 25.00 411 441
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.49 -1 21.90 422 461
PPR_3 Pentatricopeptide repeat domain 7.5E-07 19 25.00 434 478
PPR_1 PPR repeat 7.1E-14 42 23.80 440 472
AEP1 ATPase expression protein 1 0.66 -1 27.00 442 480
PPR_2 PPR repeat family 4.2E-22 68 30.00 444 492
PPR PPR repeat 2.1E-10 31 25.00 446 474
PPR_3 Pentatricopeptide repeat domain 2.7E-08 24 25.00 466 512
ATP13 Mitochondrial ATPase expression 0.0044 7 26.70 469 508
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00049 9 25.90 474 505
PPR_1 PPR repeat 6.6E-13 38 23.80 476 507
PPR PPR repeat 1.3E-10 31 25.00 482 511
PPR_2 PPR repeat family 2.2E-13 40 30.00 485 524
TPR_7 Tetratricopeptide repeat 0.032 5 27.90 490 505
TPR_2 Tetratricopeptide repeat 0.041 5 22.40 490 505
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-11 32 27.00 492 614
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.11 2 21.90 503 527
AEP1 ATPase expression protein 1 0.0017 8 27.00 511 556
PPR_1 PPR repeat 7.3E-11 32 23.80 511 542
PPR_3 Pentatricopeptide repeat domain 5.4E-11 33 25.00 511 560
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.01 5 25.90 513 554
PPR_2 PPR repeat family 5.3E-17 52 30.00 514 562
PPR PPR repeat 4.2E-09 27 25.00 516 545
RabGAP-TBC Rab-GTPase-TBC domain 0.017 5 24.50 543 593
PPR_1 PPR repeat 1.8E-12 37 23.80 545 576
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.013 4 25.90 551 646
PPR PPR repeat 3.3E-09 27 25.00 551 581
ATP13 Mitochondrial ATPase expression 0.22 2 26.70 552 579
PPR_3 Pentatricopeptide repeat domain 6.1E-05 13 25.00 557 595
PPR_2 PPR repeat family 1.2E-07 22 30.00 558 585
PPR_3 Pentatricopeptide repeat domain 1.2E-09 28 25.00 571 628
HTH_56 Cch helix turn helix domain 0.64 0 26.20 572 616
PPR_1 PPR repeat 3.2E-08 23 23.80 579 611
AEP1 ATPase expression protein 1 0.24 0 27.00 580 619
PPR_2 PPR repeat family 1.7E-11 34 30.00 583 627
PPR PPR repeat 1.9E-09 28 25.00 588 616
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-10 30 27.00 600 698
PPR_3 Pentatricopeptide repeat domain 3E-10 30 25.00 608 665
PPR_1 PPR repeat 1.5E-10 31 23.80 615 647
PPR_2 PPR repeat family 1E-11 35 30.00 618 661
PPR PPR repeat 2.2E-08 24 25.00 621 649
HTH_56 Cch helix turn helix domain 0.0036 8 26.20 635 688
ATP13 Mitochondrial ATPase expression 0.011 6 26.70 644 685
PPR_3 Pentatricopeptide repeat domain 6.7E-11 32 25.00 649 702
PPR_1 PPR repeat 1.8E-15 47 23.80 652 683
PPR_2 PPR repeat family 1.6E-20 63 30.00 655 703
PPR PPR repeat 1.3E-10 31 25.00 658 688
AEP1 ATPase expression protein 1 0.0039 6 27.00 659 694
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00073 9 25.90 659 721
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.012 5 21.90 660 702
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-05 14 27.00 668 726
Toxin_YhaV Toxin with endonuclease activity YhaV 0.54 0 22.80 672 692
PPR_3 Pentatricopeptide repeat domain 1.5E-07 22 25.00 679 725
PPR_1 PPR repeat 1.5E-09 28 23.80 686 718
ATP13 Mitochondrial ATPase expression 0.97 -1 26.70 689 720
PPR PPR repeat 2.3E-09 27 25.00 693 723
PPR_2 PPR repeat family 1.5E-10 31 30.00 694 727
Toxin_YhaV Toxin with endonuclease activity YhaV 0.15 2 22.80 706 727

729

SR-25
PPR
PPR_2
PPR_1
TPR_7
TPR_16
AEP1
PPR_2
PPR
PPR_3
TPR_16
PPR_2
PPR
PPR_long
PPR_3
HTH_56
PPR_1
PPR_2
PPR
ECSIT
ATP13
PPR_1
MRP-S27
PPR_2
PPR
PPR_3
PPR_1
PPR_2
HTH_56
PPR
TPR_2
TPR_16
Toxin_YhaV
TPR_7
PPR_1
PPR
PPR_2
PPR_long
PPR_3
RabGAP-TBC
ATP13
PPR_1
PPR_2
PPR
MRP-S27
ECSIT
PPR_3
PPR_1
ATP13
PPR_2
PPR
ECSIT
PPR_3
PPR_1
AEP1
PPR_2
PPR
PPR_3
ATP13
MRP-S27
PPR_1
PPR
PPR_2
TPR_7
TPR_2
PPR_long
ECSIT
AEP1
PPR_1
PPR_3
MRP-S27
PPR_2
PPR
RabGAP-TBC
PPR_1
MRP-S27
PPR
ATP13
PPR_3
PPR_2
PPR_3
HTH_56
PPR_1
AEP1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
HTH_56
ATP13
PPR_3
PPR_1
PPR_2
PPR
AEP1
MRP-S27
ECSIT
PPR_long
Toxin_YhaV
PPR_3
PPR_1
ATP13
PPR
PPR_2
Toxin_YhaV

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_16

HTH_56

Toxin_YhaV
17706670 prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol. 2007;372:894-905.

SR-25
10708573 Molecular cloning and expression analysis of a putative nuclear protein, SR-25. Biochem Biophys Res Commun. 2000;269:444-450.
17952876 Dominant negative Rac1 attenuates paclitaxel-induced apoptosis in human melanoma cells through upregulation of heat shock protein 27: a functional proteomic analysis. Proteomics. 2007;7:4112-4122.

ATP13

RabGAP-TBC

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_7

Domain	Description	Evalue	Bits	GA	Start	End
SR-25	Nuclear RNA-splicing-associated protein	0.0042	7	55.00	28	52
PPR	PPR repeat	2.6E-05	15	25.00	116	142
PPR_2	PPR repeat family	0.013	6	30.00	117	143
PPR_1	PPR repeat	0.64	0	23.80	117	133
TPR_7	Tetratricopeptide repeat	1	0	27.90	117	140
TPR_16	Tetratricopeptide repeat	0.12	3	32.70	119	146
AEP1	ATPase expression protein 1	0.054	3	27.00	164	202
PPR_2	PPR repeat family	0.033	5	30.00	167	197
PPR	PPR repeat	0.001	10	25.00	168	196
PPR_3	Pentatricopeptide repeat domain	0.00029	11	25.00	170	209
TPR_16	Tetratricopeptide repeat	0.07	4	32.70	171	193
PPR_2	PPR repeat family	2.7E-12	37	30.00	201	247
PPR	PPR repeat	2.1E-05	15	25.00	203	231
PPR_long	Pentacotripeptide-repeat region of PRORP	6.7E-13	39	27.00	218	355
PPR_3	Pentatricopeptide repeat domain	3.7E-11	33	25.00	222	280
HTH_56	Cch helix turn helix domain	0.41	1	26.20	226	266
PPR_1	PPR repeat	2E-07	21	23.80	230	253
PPR_2	PPR repeat family	1.1E-13	41	30.00	234	280
PPR	PPR repeat	1.7E-06	18	25.00	236	266
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.1	2	21.90	249	280
ATP13	Mitochondrial ATPase expression	0.0036	7	26.70	258	295
PPR_1	PPR repeat	2E-13	40	23.80	264	296
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.071	2	25.90	265	331
PPR_2	PPR repeat family	8.3E-22	67	30.00	268	317
PPR	PPR repeat	6E-12	35	25.00	271	301
PPR_3	Pentatricopeptide repeat domain	3.4E-11	33	25.00	293	347
PPR_1	PPR repeat	4.8E-15	45	23.80	299	331
PPR_2	PPR repeat family	4E-19	59	30.00	303	352
HTH_56	Cch helix turn helix domain	0.7	0	26.20	305	336
PPR	PPR repeat	2.5E-13	40	25.00	306	336
TPR_2	Tetratricopeptide repeat	0.02	6	22.40	315	332
TPR_16	Tetratricopeptide repeat	0.046	5	32.70	317	340
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.046	4	22.80	317	341
TPR_7	Tetratricopeptide repeat	0.39	1	27.90	319	334
PPR_1	PPR repeat	7.1E-09	26	23.80	335	367
PPR	PPR repeat	1.9E-05	15	25.00	342	370
PPR_2	PPR repeat family	9.7E-08	22	30.00	346	382
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-07	21	27.00	359	469
PPR_3	Pentatricopeptide repeat domain	1.2E-08	25	25.00	361	420
RabGAP-TBC	Rab-GTPase-TBC domain	0.039	4	24.50	361	399
ATP13	Mitochondrial ATPase expression	0.17	2	26.70	367	401
PPR_1	PPR repeat	1.2E-05	15	23.80	370	396
PPR_2	PPR repeat family	4.8E-10	30	30.00	373	419
PPR	PPR repeat	2.6E-07	21	25.00	376	406
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0067	5	25.90	387	441
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.79	-1	21.90	399	425
PPR_3	Pentatricopeptide repeat domain	4.4E-07	20	25.00	404	453
PPR_1	PPR repeat	8.9E-13	38	23.80	405	436
ATP13	Mitochondrial ATPase expression	0.43	1	26.70	405	437
PPR_2	PPR repeat family	2.8E-19	59	30.00	408	457
PPR	PPR repeat	5.2E-10	29	25.00	411	441
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.49	-1	21.90	422	461
PPR_3	Pentatricopeptide repeat domain	7.5E-07	19	25.00	434	478
PPR_1	PPR repeat	7.1E-14	42	23.80	440	472
AEP1	ATPase expression protein 1	0.66	-1	27.00	442	480
PPR_2	PPR repeat family	4.2E-22	68	30.00	444	492
PPR	PPR repeat	2.1E-10	31	25.00	446	474
PPR_3	Pentatricopeptide repeat domain	2.7E-08	24	25.00	466	512
ATP13	Mitochondrial ATPase expression	0.0044	7	26.70	469	508
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00049	9	25.90	474	505
PPR_1	PPR repeat	6.6E-13	38	23.80	476	507
PPR	PPR repeat	1.3E-10	31	25.00	482	511
PPR_2	PPR repeat family	2.2E-13	40	30.00	485	524
TPR_7	Tetratricopeptide repeat	0.032	5	27.90	490	505
TPR_2	Tetratricopeptide repeat	0.041	5	22.40	490	505
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-11	32	27.00	492	614
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.11	2	21.90	503	527
AEP1	ATPase expression protein 1	0.0017	8	27.00	511	556
PPR_1	PPR repeat	7.3E-11	32	23.80	511	542
PPR_3	Pentatricopeptide repeat domain	5.4E-11	33	25.00	511	560
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.01	5	25.90	513	554
PPR_2	PPR repeat family	5.3E-17	52	30.00	514	562
PPR	PPR repeat	4.2E-09	27	25.00	516	545
RabGAP-TBC	Rab-GTPase-TBC domain	0.017	5	24.50	543	593
PPR_1	PPR repeat	1.8E-12	37	23.80	545	576
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.013	4	25.90	551	646
PPR	PPR repeat	3.3E-09	27	25.00	551	581
ATP13	Mitochondrial ATPase expression	0.22	2	26.70	552	579
PPR_3	Pentatricopeptide repeat domain	6.1E-05	13	25.00	557	595
PPR_2	PPR repeat family	1.2E-07	22	30.00	558	585
PPR_3	Pentatricopeptide repeat domain	1.2E-09	28	25.00	571	628
HTH_56	Cch helix turn helix domain	0.64	0	26.20	572	616
PPR_1	PPR repeat	3.2E-08	23	23.80	579	611
AEP1	ATPase expression protein 1	0.24	0	27.00	580	619
PPR_2	PPR repeat family	1.7E-11	34	30.00	583	627
PPR	PPR repeat	1.9E-09	28	25.00	588	616
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-10	30	27.00	600	698
PPR_3	Pentatricopeptide repeat domain	3E-10	30	25.00	608	665
PPR_1	PPR repeat	1.5E-10	31	23.80	615	647
PPR_2	PPR repeat family	1E-11	35	30.00	618	661
PPR	PPR repeat	2.2E-08	24	25.00	621	649
HTH_56	Cch helix turn helix domain	0.0036	8	26.20	635	688
ATP13	Mitochondrial ATPase expression	0.011	6	26.70	644	685
PPR_3	Pentatricopeptide repeat domain	6.7E-11	32	25.00	649	702
PPR_1	PPR repeat	1.8E-15	47	23.80	652	683
PPR_2	PPR repeat family	1.6E-20	63	30.00	655	703
PPR	PPR repeat	1.3E-10	31	25.00	658	688
AEP1	ATPase expression protein 1	0.0039	6	27.00	659	694
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00073	9	25.90	659	721
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.012	5	21.90	660	702
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-05	14	27.00	668	726
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.54	0	22.80	672	692
PPR_3	Pentatricopeptide repeat domain	1.5E-07	22	25.00	679	725
PPR_1	PPR repeat	1.5E-09	28	23.80	686	718
ATP13	Mitochondrial ATPase expression	0.97	-1	26.70	689	720
PPR	PPR repeat	2.3E-09	27	25.00	693	723
PPR_2	PPR repeat family	1.5E-10	31	30.00	694	727
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.15	2	22.80	706	727