c2pfam

AT5G03660.1 :

Domain Description Evalue Bits GA Start End
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.1 4 24.10 13 59
CENP-H Centromere protein H (CENP-H) 0.0042 8 23.00 15 86
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.79 1 28.70 16 57
DUF3584 Protein of unknown function (DUF3584) 0.0006 8 28.40 18 157
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.0058 6 33.20 21 148
SAM_KSR1 SAM like domain present in kinase suppressor RAS 1 0.31 2 27.00 22 55
Exonuc_VII_L Exonuclease VII, large subunit 0.0004 11 21.70 26 148
Transcrip_act Transcriptional activator 0 212 27.50 26 169
Prominin Prominin 0.0014 7 31.00 26 141
Effector_1 Effector from type III secretion system 7.1E-06 16 23.80 28 151
OmpH Outer membrane protein (OmpH-like) 0.035 5 28.70 28 84
DUF4407 Domain of unknown function (DUF4407) 0.00057 10 31.30 28 149
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 4.7E-05 14 41.00 30 113
Fib_alpha Fibrinogen alpha/beta chain family 0.26 2 26.20 31 72
Coatamer_beta_C Coatamer beta C-terminal region 0.00041 11 21.60 36 104
YscO Type III secretion protein YscO 0.0057 7 22.50 37 164
ISG65-75 Invariant surface glycoprotein 0.00052 10 20.60 38 140
CASP_C CASP C terminal 5.4E-05 13 23.80 38 72
KELK KELK-motif containing domain of MRCK Ser/Thr protein kinase 0.024 6 27.00 42 91
Spc7 Spc7 kinetochore protein 0.00015 11 34.00 43 165
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.00039 12 24.10 46 149
SAM_KSR1 SAM like domain present in kinase suppressor RAS 1 0.24 2 27.00 48 81
Laminin_II Laminin Domain II 0.42 1 27.70 49 67
DUF1664 Protein of unknown function (DUF1664) 0.0059 7 30.00 52 119
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 2.9E-05 15 28.70 55 149
YPEB YpeB sporulation 0.00072 10 30.50 63 156
NPV_P10 Nucleopolyhedrovirus P10 protein 0.12 4 29.80 64 91
OmpH Outer membrane protein (OmpH-like) 4.6E-05 15 28.70 75 151
Laminin_II Laminin Domain II 3.2E-05 15 27.70 90 169
DUF1664 Protein of unknown function (DUF1664) 0.0022 9 30.00 90 123
Fib_alpha Fibrinogen alpha/beta chain family 0.0038 8 26.20 90 148
DAGAT Diacylglycerol acyltransferase 7E-05 13 21.70 92 143
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0016 10 29.80 94 137
KELK KELK-motif containing domain of MRCK Ser/Thr protein kinase 0.024 6 27.00 94 155
SAM_KSR1 SAM like domain present in kinase suppressor RAS 1 0.00098 10 27.00 97 149
CASP_C CASP C terminal 0.19 2 23.80 101 152
CENP-H Centromere protein H (CENP-H) 0.012 7 23.00 102 167
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 0.84 0 41.00 119 144

173

Jnk-SapK_ap_N
CENP-H
TMF_TATA_bd
DUF3584
Atg14
SAM_KSR1
Exonuc_VII_L
Transcrip_act
Prominin
Effector_1
OmpH
DUF4407
Phasin
Fib_alpha
Coatamer_beta_C
YscO
ISG65-75
CASP_C
KELK
Spc7
Jnk-SapK_ap_N
SAM_KSR1
Laminin_II
DUF1664
TMF_TATA_bd
YPEB
NPV_P10
OmpH
Laminin_II
DUF1664
Fib_alpha
DAGAT
NPV_P10
KELK
SAM_KSR1
CASP_C
CENP-H
Phasin

References:

Atg14

Effector_1

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

CASP_C
12429822 CASP, the alternatively spliced product of the gene encoding the CCAAT-displacement protein transcription factor, is a Golgi membrane protein related to giantin. Mol Biol Cell 2002;13:3761-3774.

DAGAT
11751875 The DGA1 gene determines a second triglyceride synthetic pathway in yeast. J Biol Chem 2002;277:8877-8881.
11751830 Synthesis of triacylglycerols by the acyl-coenzyme A:diacyl-glycerol acyltransferase Dga1p in lipid particles of the yeast Saccharomyces cerevisiae. J Bacteriol 2002;184:519-524.

Phasin
12099824 Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. Biomacromolecules 2002;3:787-792.

DUF4407

ISG65-75
1587856 Molecular characterization of two invariant surface glycoproteins specific for the bloodstream stage of Trypanosoma brucei. J Biol Chem. 1992;267:10797-10803.
18538880 Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75. J Biotechnol. 2008;135:247-254.

YPEB

Fib_alpha
11601975 Crystal structure of native chicken fibrinogen at 2.7 A resolution. Biochemistry. 2001;40:12515-12523.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

YscO
9683485 YscO of Yersinia pestis is a mobile core component of the Yop secretion system. J Bacteriol 1998;180:3882-3890.

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

Transcrip_act

DUF1664

Coatamer_beta_C

SAM_KSR1

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

CENP-H
10488063 Characterization of a novel kinetochore protein, CENP-H. J Biol Chem 1999;274:27343-27346.
11500386 CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells. EMBO J 2001;20:4603-4617.

DUF3584

KELK

OmpH
2318304 Bacterial 'histone-like protein I' (HLP-I) is an outer membrane constituent? FEBS Lett 1990;262:123-126.
15304217 Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 2004;15:367-374.

Jnk-SapK_ap_N

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

Domain	Description	Evalue	Bits	GA	Start	End
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.1	4	24.10	13	59
CENP-H	Centromere protein H (CENP-H)	0.0042	8	23.00	15	86
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.79	1	28.70	16	57
DUF3584	Protein of unknown function (DUF3584)	0.0006	8	28.40	18	157
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.0058	6	33.20	21	148
SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	0.31	2	27.00	22	55
Exonuc_VII_L	Exonuclease VII, large subunit	0.0004	11	21.70	26	148
Transcrip_act	Transcriptional activator	0	212	27.50	26	169
Prominin	Prominin	0.0014	7	31.00	26	141
Effector_1	Effector from type III secretion system	7.1E-06	16	23.80	28	151
OmpH	Outer membrane protein (OmpH-like)	0.035	5	28.70	28	84
DUF4407	Domain of unknown function (DUF4407)	0.00057	10	31.30	28	149
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	4.7E-05	14	41.00	30	113
Fib_alpha	Fibrinogen alpha/beta chain family	0.26	2	26.20	31	72
Coatamer_beta_C	Coatamer beta C-terminal region	0.00041	11	21.60	36	104
YscO	Type III secretion protein YscO	0.0057	7	22.50	37	164
ISG65-75	Invariant surface glycoprotein	0.00052	10	20.60	38	140
CASP_C	CASP C terminal	5.4E-05	13	23.80	38	72
KELK	KELK-motif containing domain of MRCK Ser/Thr protein kinase	0.024	6	27.00	42	91
Spc7	Spc7 kinetochore protein	0.00015	11	34.00	43	165
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.00039	12	24.10	46	149
SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	0.24	2	27.00	48	81
Laminin_II	Laminin Domain II	0.42	1	27.70	49	67
DUF1664	Protein of unknown function (DUF1664)	0.0059	7	30.00	52	119
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	2.9E-05	15	28.70	55	149
YPEB	YpeB sporulation	0.00072	10	30.50	63	156
NPV_P10	Nucleopolyhedrovirus P10 protein	0.12	4	29.80	64	91
OmpH	Outer membrane protein (OmpH-like)	4.6E-05	15	28.70	75	151
Laminin_II	Laminin Domain II	3.2E-05	15	27.70	90	169
DUF1664	Protein of unknown function (DUF1664)	0.0022	9	30.00	90	123
Fib_alpha	Fibrinogen alpha/beta chain family	0.0038	8	26.20	90	148
DAGAT	Diacylglycerol acyltransferase	7E-05	13	21.70	92	143
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0016	10	29.80	94	137
KELK	KELK-motif containing domain of MRCK Ser/Thr protein kinase	0.024	6	27.00	94	155
SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	0.00098	10	27.00	97	149
CASP_C	CASP C terminal	0.19	2	23.80	101	152
CENP-H	Centromere protein H (CENP-H)	0.012	7	23.00	102	167
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	0.84	0	41.00	119	144