c2pfam

AT5G03800.1 :

Domain Description Evalue Bits GA Start End
RPN7 26S proteasome subunit RPN7 0.11 1 25.30 73 100
PPR PPR repeat 0.00064 9 25.00 118 137
PPR_2 PPR repeat family 0.091 2 30.00 118 137
PPR_1 PPR repeat 8.4E-06 15 23.80 142 172
PPR_2 PPR repeat family 4.8E-12 35 30.00 143 192
PPR_3 Pentatricopeptide repeat domain 3.1E-08 23 25.00 144 192
PPR PPR repeat 1.5E-09 27 25.00 146 176
PPR_long Pentacotripeptide-repeat region of PRORP 0.015 4 27.00 147 193
PPR PPR repeat 0.23 1 25.00 182 212
PPR_2 PPR repeat family 0.29 1 30.00 216 249
PPR PPR repeat 0.39 0 25.00 234 248
PPR_long Pentacotripeptide-repeat region of PRORP 0.25 -1 27.00 234 275
PPR_3 Pentatricopeptide repeat domain 0.089 2 25.00 247 277
PPR_1 PPR repeat 2.1E-06 16 23.80 247 275
PPR_2 PPR repeat family 4.9E-13 38 30.00 248 295
PPR PPR repeat 9.2E-09 24 25.00 251 276
PPR_1 PPR repeat 0.87 -2 23.80 283 294
PPR PPR repeat 0.00019 11 25.00 324 347
PPR_2 PPR repeat family 0.058 3 30.00 324 346
PPR_2 PPR repeat family 6E-05 12 30.00 350 375
PPR_1 PPR repeat 0.00094 8 23.80 350 374
PPR_3 Pentatricopeptide repeat domain 2.1E-06 17 25.00 350 390
PPR PPR repeat 2.2E-05 14 25.00 352 375
PPR_long Pentacotripeptide-repeat region of PRORP 0.0083 4 27.00 354 425
RPN7 26S proteasome subunit RPN7 0.19 0 25.30 357 384
PPR_2 PPR repeat family 3.3E-15 45 30.00 380 427
PPR_3 Pentatricopeptide repeat domain 0.00094 8 25.00 381 414
PPR_1 PPR repeat 8.6E-10 27 23.80 381 408
PPR PPR repeat 3.4E-11 32 25.00 383 413
PPR PPR repeat 0.0017 8 25.00 456 478
PPR_2 PPR repeat family 0.042 3 30.00 456 477
PPR_1 PPR repeat 0.0091 5 23.80 457 478
PPR_2 PPR repeat family 0.00025 10 30.00 488 510
PPR PPR repeat 3.1E-07 20 25.00 489 510
PPR_1 PPR repeat 0.0001 11 23.80 489 509
PPR_long Pentacotripeptide-repeat region of PRORP 0.00031 9 27.00 504 621
PPR_3 Pentatricopeptide repeat domain 0.0019 7 25.00 560 585
PPR_1 PPR repeat 0.00037 9 23.80 560 583
PPR PPR repeat 2.9E-07 20 25.00 560 586
PPR_2 PPR repeat family 3.3E-06 16 30.00 560 585
RPN7 26S proteasome subunit RPN7 0.0027 6 25.30 562 597
PPR_3 Pentatricopeptide repeat domain 7.7E-09 25 25.00 585 632
PPR_1 PPR repeat 0.00051 9 23.80 586 613
PPR_2 PPR repeat family 1.7E-12 37 30.00 586 632
PPR PPR repeat 2.5E-08 23 25.00 588 617
PPR_1 PPR repeat 0.026 3 23.80 616 632
PPR_long Pentacotripeptide-repeat region of PRORP 0.1 1 27.00 634 687
PPR PPR repeat 0.5 0 25.00 634 651
PPR_2 PPR repeat family 0.34 0 30.00 634 665
PPR_1 PPR repeat 0.17 1 23.80 656 686
PPR_2 PPR repeat family 0.27 1 30.00 659 686
PPR PPR repeat 0.00023 11 25.00 662 686
RPN7 26S proteasome subunit RPN7 0.57 -1 25.30 712 733
PPR PPR repeat 0.0053 6 25.00 735 756
DYW_deaminase DYW family of nucleic acid deaminases 5.4E-34 106 31.60 762 885

896

RPN7
PPR
PPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
RPN7
PPR_2
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_long
PPR_3
PPR_1
PPR
PPR_2
RPN7
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_long
PPR
PPR_2
PPR_1
PPR_2
PPR
RPN7
PPR
DYW_deaminase

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
RPN7	26S proteasome subunit RPN7	0.11	1	25.30	73	100
PPR	PPR repeat	0.00064	9	25.00	118	137
PPR_2	PPR repeat family	0.091	2	30.00	118	137
PPR_1	PPR repeat	8.4E-06	15	23.80	142	172
PPR_2	PPR repeat family	4.8E-12	35	30.00	143	192
PPR_3	Pentatricopeptide repeat domain	3.1E-08	23	25.00	144	192
PPR	PPR repeat	1.5E-09	27	25.00	146	176
PPR_long	Pentacotripeptide-repeat region of PRORP	0.015	4	27.00	147	193
PPR	PPR repeat	0.23	1	25.00	182	212
PPR_2	PPR repeat family	0.29	1	30.00	216	249
PPR	PPR repeat	0.39	0	25.00	234	248
PPR_long	Pentacotripeptide-repeat region of PRORP	0.25	-1	27.00	234	275
PPR_3	Pentatricopeptide repeat domain	0.089	2	25.00	247	277
PPR_1	PPR repeat	2.1E-06	16	23.80	247	275
PPR_2	PPR repeat family	4.9E-13	38	30.00	248	295
PPR	PPR repeat	9.2E-09	24	25.00	251	276
PPR_1	PPR repeat	0.87	-2	23.80	283	294
PPR	PPR repeat	0.00019	11	25.00	324	347
PPR_2	PPR repeat family	0.058	3	30.00	324	346
PPR_2	PPR repeat family	6E-05	12	30.00	350	375
PPR_1	PPR repeat	0.00094	8	23.80	350	374
PPR_3	Pentatricopeptide repeat domain	2.1E-06	17	25.00	350	390
PPR	PPR repeat	2.2E-05	14	25.00	352	375
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0083	4	27.00	354	425
RPN7	26S proteasome subunit RPN7	0.19	0	25.30	357	384
PPR_2	PPR repeat family	3.3E-15	45	30.00	380	427
PPR_3	Pentatricopeptide repeat domain	0.00094	8	25.00	381	414
PPR_1	PPR repeat	8.6E-10	27	23.80	381	408
PPR	PPR repeat	3.4E-11	32	25.00	383	413
PPR	PPR repeat	0.0017	8	25.00	456	478
PPR_2	PPR repeat family	0.042	3	30.00	456	477
PPR_1	PPR repeat	0.0091	5	23.80	457	478
PPR_2	PPR repeat family	0.00025	10	30.00	488	510
PPR	PPR repeat	3.1E-07	20	25.00	489	510
PPR_1	PPR repeat	0.0001	11	23.80	489	509
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00031	9	27.00	504	621
PPR_3	Pentatricopeptide repeat domain	0.0019	7	25.00	560	585
PPR_1	PPR repeat	0.00037	9	23.80	560	583
PPR	PPR repeat	2.9E-07	20	25.00	560	586
PPR_2	PPR repeat family	3.3E-06	16	30.00	560	585
RPN7	26S proteasome subunit RPN7	0.0027	6	25.30	562	597
PPR_3	Pentatricopeptide repeat domain	7.7E-09	25	25.00	585	632
PPR_1	PPR repeat	0.00051	9	23.80	586	613
PPR_2	PPR repeat family	1.7E-12	37	30.00	586	632
PPR	PPR repeat	2.5E-08	23	25.00	588	617
PPR_1	PPR repeat	0.026	3	23.80	616	632
PPR_long	Pentacotripeptide-repeat region of PRORP	0.1	1	27.00	634	687
PPR	PPR repeat	0.5	0	25.00	634	651
PPR_2	PPR repeat family	0.34	0	30.00	634	665
PPR_1	PPR repeat	0.17	1	23.80	656	686
PPR_2	PPR repeat family	0.27	1	30.00	659	686
PPR	PPR repeat	0.00023	11	25.00	662	686
RPN7	26S proteasome subunit RPN7	0.57	-1	25.30	712	733
PPR	PPR repeat	0.0053	6	25.00	735	756
DYW_deaminase	DYW family of nucleic acid deaminases	5.4E-34	106	31.60	762	885