c2pfam

AT5G04390.1 :

Domain Description Evalue Bits GA Start End
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.01 5 25.20 145 164
Zn-ribbon_8 Zinc ribbon domain 0.0002 11 34.40 151 167
zf-C2H2_8 C2H2-type zinc ribbon 0.00014 12 30.00 151 181
zf-C2H2_6 C2H2-type zinc finger 9.4E-15 44 25.00 152 177
zf-C2H2_4 C2H2-type zinc finger 6.7E-06 16 27.00 153 175
zf-C2H2 Zinc finger, C2H2 type 3.5E-05 14 20.80 153 175
zf-met Zinc-finger of C2H2 type 0.00032 11 21.20 153 176
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.027 4 26.90 153 175
zf-C2H2_11 zinc-finger C2H2-type 0.019 4 27.00 153 172
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.00048 10 22.60 155 176
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.00028 11 26.90 214 251
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.02 4 25.20 222 240
zf-C2H2_6 C2H2-type zinc finger 2.9E-14 42 25.00 228 252
zf-C2H2_4 C2H2-type zinc finger 1.1E-06 19 27.00 229 251
zf-C2H2 Zinc finger, C2H2 type 7.6E-05 13 20.80 229 251
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.11 2 22.60 229 248
zf-C2H2_11 zinc-finger C2H2-type 0.0021 7 27.00 229 249
Zn-ribbon_8 Zinc ribbon domain 0.19 2 34.40 230 240
zf-met Zinc-finger of C2H2 type 0.0061 7 21.20 230 249

362

RNA_POL_M_15KD
Zn-ribbon_8
zf-C2H2_8
zf-C2H2_6
zf-C2H2_4
zf-C2H2
zf-met
zf-C2H2_2
zf-C2H2_11
zf-C2H2_jaz
zf-C2H2_2
RNA_POL_M_15KD
zf-C2H2_6
zf-C2H2_4
zf-C2H2
zf-C2H2_jaz
zf-C2H2_11
Zn-ribbon_8
zf-met

References:

zf-C2H2_6

zf-C2H2_4

zf-C2H2_11

zf-C2H2_2

Zn-ribbon_8

zf-met

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

RNA_POL_M_15KD

zf-C2H2_8

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.01	5	25.20	145	164
Zn-ribbon_8	Zinc ribbon domain	0.0002	11	34.40	151	167
zf-C2H2_8	C2H2-type zinc ribbon	0.00014	12	30.00	151	181
zf-C2H2_6	C2H2-type zinc finger	9.4E-15	44	25.00	152	177
zf-C2H2_4	C2H2-type zinc finger	6.7E-06	16	27.00	153	175
zf-C2H2	Zinc finger, C2H2 type	3.5E-05	14	20.80	153	175
zf-met	Zinc-finger of C2H2 type	0.00032	11	21.20	153	176
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.027	4	26.90	153	175
zf-C2H2_11	zinc-finger C2H2-type	0.019	4	27.00	153	172
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.00048	10	22.60	155	176
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.00028	11	26.90	214	251
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.02	4	25.20	222	240
zf-C2H2_6	C2H2-type zinc finger	2.9E-14	42	25.00	228	252
zf-C2H2_4	C2H2-type zinc finger	1.1E-06	19	27.00	229	251
zf-C2H2	Zinc finger, C2H2 type	7.6E-05	13	20.80	229	251
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.11	2	22.60	229	248
zf-C2H2_11	zinc-finger C2H2-type	0.0021	7	27.00	229	249
Zn-ribbon_8	Zinc ribbon domain	0.19	2	34.40	230	240
zf-met	Zinc-finger of C2H2 type	0.0061	7	21.20	230	249