c2pfam

AT5G04420.1 :

Domain Description Evalue Bits GA Start End
Kelch_5 Kelch motif 2E-07 22 27.00 34 69
Kelch_4 Galactose oxidase, central domain 3.3E-08 25 21.60 34 75
Kelch_1 Kelch motif 6.4E-15 46 20.10 34 75
Kelch_2 Kelch motif 1E-11 36 21.30 34 77
Kelch_6 Kelch motif 6.5E-11 34 25.30 35 74
Kelch_3 Galactose oxidase, central domain 1.6E-05 17 21.90 45 75
Kelch_5 Kelch motif 0.0095 8 27.00 100 130
Kelch_2 Kelch motif 0.0038 9 21.30 104 132
Kelch_6 Kelch motif 0.11 5 25.30 105 139
Kelch_3 Galactose oxidase, central domain 0.82 2 21.90 111 160
Kelch_1 Kelch motif 0.12 4 20.10 111 126
Kelch_5 Kelch motif 3.7E-06 18 27.00 149 188
Kelch_1 Kelch motif 2.1E-05 16 20.10 152 194
Kelch_2 Kelch motif 3.7E-09 28 21.30 153 194
Kelch_4 Galactose oxidase, central domain 1.6E-09 29 21.60 153 196
Kelch_6 Kelch motif 1.5E-08 26 25.30 155 195
Kelch_3 Galactose oxidase, central domain 2.8E-07 23 21.90 162 208
Kelch_5 Kelch motif 3.8E-09 28 27.00 201 239
Kelch_4 Galactose oxidase, central domain 5.9E-10 31 21.60 203 244
Kelch_2 Kelch motif 6E-06 18 21.30 203 243
Kelch_6 Kelch motif 2.2E-06 20 25.30 203 244
Kelch_1 Kelch motif 7.3E-05 14 20.10 207 243
Kelch_3 Galactose oxidase, central domain 2.5E-09 29 21.90 215 260
Kelch_6 Kelch motif 0.029 7 25.30 254 293
Kelch_1 Kelch motif 0.017 6 20.10 254 276
Kelch_2 Kelch motif 0.79 2 21.30 254 273
Kelch_4 Galactose oxidase, central domain 0.045 6 21.60 254 295
Kelch_5 Kelch motif 0.0012 10 27.00 254 287
Kelch_2 Kelch motif 0.0067 8 21.30 310 340
Kelch_1 Kelch motif 0.0009 11 20.10 312 339
Kelch_4 Galactose oxidase, central domain 0.027 6 21.60 312 332
Kelch_6 Kelch motif 0.041 6 25.30 312 338
Kelch_5 Kelch motif 0.0011 10 27.00 316 341
HAUS-augmin3 HAUS augmin-like complex subunit 3 0.002 9 27.80 386 480
Fmp27_WPPW RNA pol II promoter Fmp27 protein domain 0.011 6 19.80 393 458
DHR10 Designed helical repeat protein 10 domain 0.0079 8 28.40 395 472
Prefoldin Prefoldin subunit 0.0026 9 23.20 395 440
Macoilin Transmembrane protein 2.7E-07 21 32.00 395 474
Filament Intermediate filament protein 0.00064 11 40.00 396 490
FPP Filament-like plant protein, long coiled-coil 0.00015 12 40.00 397 485
KASH_CCD Coiled-coil region of CCDC155 or KASH 0.00063 11 38.60 397 452
Spc7 Spc7 kinetochore protein 0.00085 10 34.00 398 482
GAS Growth-arrest specific micro-tubule binding 0.0026 9 32.30 398 482
TSC22 TSC-22/dip/bun family 0.0054 9 25.00 398 430
DUF724 Protein of unknown function (DUF724) 3E-05 16 23.40 398 474
Crescentin Crescentin protein 9.6E-05 13 100.00 399 475
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.018 7 30.00 399 492
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.011 6 33.20 399 472
YabA Initiation control protein YabA 0.028 7 30.00 400 446
DUF1664 Protein of unknown function (DUF1664) 0.0023 10 30.00 400 469
Golgin_A5 Golgin subfamily A member 5 0.0025 9 30.00 400 489
CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like 5.8E-06 17 30.00 400 492
DUF2681 Protein of unknown function (DUF2681) 0.0036 9 20.70 400 435
APG6_N Apg6 coiled-coil region 0.043 6 45.00 401 447
AAA_13 AAA domain 0.0017 9 36.00 401 478
UPF0242 Uncharacterised protein family (UPF0242) 0.00026 13 23.70 401 474
DUF3450 Protein of unknown function (DUF3450) 0.0029 9 26.90 402 484
DivIC Septum formation initiator 0.0089 8 24.00 402 435
DUF4407 Domain of unknown function (DUF4407) 0.0032 8 31.30 402 498
DUF4763 Domain of unknown function (DUF4763) 2.1E-05 16 30.10 403 470
FapA Flagellar Assembly Protein A 0.0033 8 36.70 404 482
Nup54 Nucleoporin complex subunit 54 0.011 7 30.50 404 474
DUF2205 Predicted coiled-coil protein (DUF2205) 0.02 7 26.70 404 453
DUF5082 Domain of unknown function (DUF5082) 0.018 7 33.70 406 447
Tmemb_cc2 Predicted transmembrane and coiled-coil 2 protein 1.7E-05 16 23.30 406 468
ABC_tran_CTD ABC transporter C-terminal domain 0.0063 9 32.00 407 448
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.00087 11 30.00 407 490
Cep57_CLD Centrosome localisation domain of Cep57 0.00021 13 28.00 412 496
FlxA FlxA-like protein 0.032 6 26.30 412 496
YPEB YpeB sporulation 0.0023 9 30.50 416 487
Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region 0.026 7 22.20 417 497
PRKG1_interact cGMP-dependent protein kinase interacting domain 0.03 7 32.40 418 485
Phage_Nu1 Phage DNA packaging protein Nu1 0.00045 12 21.50 419 483
YabA Initiation control protein YabA 0.046 6 30.00 438 501
SF1-HH Splicing factor 1 helix-hairpin domain 0.0051 9 29.30 439 494
DUF5082 Domain of unknown function (DUF5082) 0.078 5 33.70 442 480
DHR10 Designed helical repeat protein 10 domain 0.00096 11 28.40 450 487
DivIC Septum formation initiator 0.049 5 24.00 456 485
KASH_CCD Coiled-coil region of CCDC155 or KASH 0.016 7 38.60 460 500
ABC_tran_CTD ABC transporter C-terminal domain 0.046 6 32.00 460 478
Prefoldin Prefoldin subunit 0.077 5 23.20 460 506
TSC22 TSC-22/dip/bun family 0.63 2 25.00 461 488
APG6_N Apg6 coiled-coil region 0.062 5 45.00 462 502

514

Kelch_5
Kelch_4
Kelch_1
Kelch_2
Kelch_6
Kelch_3
Kelch_5
Kelch_2
Kelch_6
Kelch_3
Kelch_1
Kelch_5
Kelch_1
Kelch_2
Kelch_4
Kelch_6
Kelch_3
Kelch_5
Kelch_4
Kelch_2
Kelch_6
Kelch_1
Kelch_3
Kelch_6
Kelch_1
Kelch_2
Kelch_4
Kelch_5
Kelch_2
Kelch_1
Kelch_4
Kelch_6
Kelch_5
HAUS-augmin3
Fmp27_WPPW
DHR10
Prefoldin
Macoilin
Filament
FPP
KASH_CCD
Spc7
GAS
TSC22
DUF724
Crescentin
TPR_MLP1_2
Atg14
YabA
DUF1664
Golgin_A5
CALCOCO1
DUF2681
APG6_N
AAA_13
UPF0242
DUF3450
DivIC
DUF4407
DUF4763
FapA
Nup54
DUF2205
DUF5082
Tmemb_cc2
ABC_tran_CTD
CENP-F_leu_zip
Cep57_CLD
FlxA
YPEB
Uso1_p115_C
PRKG1_interact
Phage_Nu1
YabA
SF1-HH
DUF5082
DHR10
DivIC
KASH_CCD
ABC_tran_CTD
Prefoldin
TSC22
APG6_N

References:

HAUS-augmin3

Cep57_CLD

KASH_CCD

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

Kelch_3

DUF5082

DUF1664

DUF2205

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

YabA

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

FapA

DUF3450

DUF2681

CENP-F_leu_zip
7542657 CENP-F is a protein of the nuclear matrix that assembles onto kinetochores at late G2 and is rapidly degraded after mitosis. J Cell Biol. 1995;130:507-518.
14555653 LEK1 is a potential inhibitor of pocket protein-mediated cellular processes. J Biol Chem. 2004;279:664-676.

Kelch_2
8126718 Drosophila kelch motif is derived from a common enzyme fold. J Mol Biol 1994;236:1277-1282.
2002850 Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase. Nature 1991;350:87-90.
15475350 Crystal structure of the Kelch domain of human Keap1. J Biol Chem 2004;279:54750-54758.

Kelch_1
8126718 Drosophila kelch motif is derived from a common enzyme fold. J Mol Biol 1994;236:1277-1282.
2002850 Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase. Nature 1991;350:87-90.
15475350 Crystal structure of the Kelch domain of human Keap1. J Biol Chem 2004;279:54750-54758.

Crescentin

DUF724

Phage_Nu1
10600592 A mutation correcting the DNA interaction defects of a mutant phage lambda terminase, gpNu1 K35A terminase. Virology 1999;265:196-205.

Tmemb_cc2

Uso1_p115_C
11927603 Sequential tethering of Golgins and catalysis of SNAREpin assembly by the vesicle-tethering protein p115. J Cell Biol 2002;157:45-62.
12077354 Vesicle tethering complexes in membrane traffic. J Cell Sci 2002;115:2627-2637.

Fmp27_WPPW
15314641 Gene loops juxtapose promoters and terminators in yeast. Nat Genet. 2004;36:1014-1018.

Prefoldin
12456645 Structure of eukaryotic prefoldin and of its complexes with unfolded actin and the cytosolic chaperonin CCT. EMBO J 2002;21:6377-6386.

Nup54

YPEB

Atg14

DUF4407

ABC_tran_CTD

Macoilin
17341690 An improved method for the analysis of membrane proteins by mass spectrometry. Physiol Genomics. 2007; [Epub ahead of print]

CALCOCO1
14690606 CoCoA, a nuclear receptor coactivator which acts through an N-terminal activation domain of p160 coactivators. Mol Cell 2003;12:1537-1549.

FlxA

APG6_N

DUF4763

AAA_13

FPP

Golgin_A5
12656988 Golgin-84 is a rab1 binding partner involved in Golgi structure. Traffic. 2003;4:153-161.

Filament
8771189 Intermediate filament proteins. Protein Profile 1995;2:801-951.

PRKG1_interact

Kelch_6

Kelch_5

Kelch_4

TSC22
9388238 Solution structure of porcine delta sleep-inducing peptide immunoreactive peptide A homolog of the shortsighted gene product. J Biol Chem 1997;272:30918-30927.

SF1-HH

DHR10

UPF0242

GAS

Domain	Description	Evalue	Bits	GA	Start	End
Kelch_5	Kelch motif	2E-07	22	27.00	34	69
Kelch_4	Galactose oxidase, central domain	3.3E-08	25	21.60	34	75
Kelch_1	Kelch motif	6.4E-15	46	20.10	34	75
Kelch_2	Kelch motif	1E-11	36	21.30	34	77
Kelch_6	Kelch motif	6.5E-11	34	25.30	35	74
Kelch_3	Galactose oxidase, central domain	1.6E-05	17	21.90	45	75
Kelch_5	Kelch motif	0.0095	8	27.00	100	130
Kelch_2	Kelch motif	0.0038	9	21.30	104	132
Kelch_6	Kelch motif	0.11	5	25.30	105	139
Kelch_3	Galactose oxidase, central domain	0.82	2	21.90	111	160
Kelch_1	Kelch motif	0.12	4	20.10	111	126
Kelch_5	Kelch motif	3.7E-06	18	27.00	149	188
Kelch_1	Kelch motif	2.1E-05	16	20.10	152	194
Kelch_2	Kelch motif	3.7E-09	28	21.30	153	194
Kelch_4	Galactose oxidase, central domain	1.6E-09	29	21.60	153	196
Kelch_6	Kelch motif	1.5E-08	26	25.30	155	195
Kelch_3	Galactose oxidase, central domain	2.8E-07	23	21.90	162	208
Kelch_5	Kelch motif	3.8E-09	28	27.00	201	239
Kelch_4	Galactose oxidase, central domain	5.9E-10	31	21.60	203	244
Kelch_2	Kelch motif	6E-06	18	21.30	203	243
Kelch_6	Kelch motif	2.2E-06	20	25.30	203	244
Kelch_1	Kelch motif	7.3E-05	14	20.10	207	243
Kelch_3	Galactose oxidase, central domain	2.5E-09	29	21.90	215	260
Kelch_6	Kelch motif	0.029	7	25.30	254	293
Kelch_1	Kelch motif	0.017	6	20.10	254	276
Kelch_2	Kelch motif	0.79	2	21.30	254	273
Kelch_4	Galactose oxidase, central domain	0.045	6	21.60	254	295
Kelch_5	Kelch motif	0.0012	10	27.00	254	287
Kelch_2	Kelch motif	0.0067	8	21.30	310	340
Kelch_1	Kelch motif	0.0009	11	20.10	312	339
Kelch_4	Galactose oxidase, central domain	0.027	6	21.60	312	332
Kelch_6	Kelch motif	0.041	6	25.30	312	338
Kelch_5	Kelch motif	0.0011	10	27.00	316	341
HAUS-augmin3	HAUS augmin-like complex subunit 3	0.002	9	27.80	386	480
Fmp27_WPPW	RNA pol II promoter Fmp27 protein domain	0.011	6	19.80	393	458
DHR10	Designed helical repeat protein 10 domain	0.0079	8	28.40	395	472
Prefoldin	Prefoldin subunit	0.0026	9	23.20	395	440
Macoilin	Transmembrane protein	2.7E-07	21	32.00	395	474
Filament	Intermediate filament protein	0.00064	11	40.00	396	490
FPP	Filament-like plant protein, long coiled-coil	0.00015	12	40.00	397	485
KASH_CCD	Coiled-coil region of CCDC155 or KASH	0.00063	11	38.60	397	452
Spc7	Spc7 kinetochore protein	0.00085	10	34.00	398	482
GAS	Growth-arrest specific micro-tubule binding	0.0026	9	32.30	398	482
TSC22	TSC-22/dip/bun family	0.0054	9	25.00	398	430
DUF724	Protein of unknown function (DUF724)	3E-05	16	23.40	398	474
Crescentin	Crescentin protein	9.6E-05	13	100.00	399	475
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.018	7	30.00	399	492
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.011	6	33.20	399	472
YabA	Initiation control protein YabA	0.028	7	30.00	400	446
DUF1664	Protein of unknown function (DUF1664)	0.0023	10	30.00	400	469
Golgin_A5	Golgin subfamily A member 5	0.0025	9	30.00	400	489
CALCOCO1	Calcium binding and coiled-coil domain (CALCOCO1) like	5.8E-06	17	30.00	400	492
DUF2681	Protein of unknown function (DUF2681)	0.0036	9	20.70	400	435
APG6_N	Apg6 coiled-coil region	0.043	6	45.00	401	447
AAA_13	AAA domain	0.0017	9	36.00	401	478
UPF0242	Uncharacterised protein family (UPF0242)	0.00026	13	23.70	401	474
DUF3450	Protein of unknown function (DUF3450)	0.0029	9	26.90	402	484
DivIC	Septum formation initiator	0.0089	8	24.00	402	435
DUF4407	Domain of unknown function (DUF4407)	0.0032	8	31.30	402	498
DUF4763	Domain of unknown function (DUF4763)	2.1E-05	16	30.10	403	470
FapA	Flagellar Assembly Protein A	0.0033	8	36.70	404	482
Nup54	Nucleoporin complex subunit 54	0.011	7	30.50	404	474
DUF2205	Predicted coiled-coil protein (DUF2205)	0.02	7	26.70	404	453
DUF5082	Domain of unknown function (DUF5082)	0.018	7	33.70	406	447
Tmemb_cc2	Predicted transmembrane and coiled-coil 2 protein	1.7E-05	16	23.30	406	468
ABC_tran_CTD	ABC transporter C-terminal domain	0.0063	9	32.00	407	448
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.00087	11	30.00	407	490
Cep57_CLD	Centrosome localisation domain of Cep57	0.00021	13	28.00	412	496
FlxA	FlxA-like protein	0.032	6	26.30	412	496
YPEB	YpeB sporulation	0.0023	9	30.50	416	487
Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	0.026	7	22.20	417	497
PRKG1_interact	cGMP-dependent protein kinase interacting domain	0.03	7	32.40	418	485
Phage_Nu1	Phage DNA packaging protein Nu1	0.00045	12	21.50	419	483
YabA	Initiation control protein YabA	0.046	6	30.00	438	501
SF1-HH	Splicing factor 1 helix-hairpin domain	0.0051	9	29.30	439	494
DUF5082	Domain of unknown function (DUF5082)	0.078	5	33.70	442	480
DHR10	Designed helical repeat protein 10 domain	0.00096	11	28.40	450	487
DivIC	Septum formation initiator	0.049	5	24.00	456	485
KASH_CCD	Coiled-coil region of CCDC155 or KASH	0.016	7	38.60	460	500
ABC_tran_CTD	ABC transporter C-terminal domain	0.046	6	32.00	460	478
Prefoldin	Prefoldin subunit	0.077	5	23.20	460	506
TSC22	TSC-22/dip/bun family	0.63	2	25.00	461	488
APG6_N	Apg6 coiled-coil region	0.062	5	45.00	462	502