c2pfam

AT5G04780.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.23 2 25.00 68 89
RNPP_C RNPP family C-terminal domain 1 -1 26.50 89 126
PPR_3 Pentatricopeptide repeat domain 0.031 5 25.00 91 124
PPR_1 PPR repeat 6.1E-05 13 23.80 95 122
PPR_2 PPR repeat family 1.2E-05 16 30.00 95 127
PPR PPR repeat 4.8E-08 23 25.00 100 126
PPR_1 PPR repeat 0.011 6 23.80 125 154
PPR_3 Pentatricopeptide repeat domain 6.6E-05 13 25.00 125 173
PPR_2 PPR repeat family 7.7E-12 35 30.00 127 172
PPR PPR repeat 1.2E-10 31 25.00 128 158
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0051 7 21.40 129 156
PPR_long Pentacotripeptide-repeat region of PRORP 0.00077 9 27.00 138 225
PPR PPR repeat 0.38 2 25.00 165 185
PPR_3 Pentatricopeptide repeat domain 0.00018 12 25.00 193 226
RNPP_C RNPP family C-terminal domain 0.00079 9 26.50 193 263
Coatomer_E Coatomer epsilon subunit 0.00047 10 20.40 201 272
PPR_1 PPR repeat 4.5E-05 13 23.80 201 223
PPR PPR repeat 3.5E-07 20 25.00 201 226
PPR_2 PPR repeat family 5.7E-06 17 30.00 201 227
Vps39_1 Vacuolar sorting protein 39 domain 1 0.2 2 21.40 202 226
TPR_14 Tetratricopeptide repeat 0.42 2 23.50 202 223
TPR_19 Tetratricopeptide repeat 0.51 1 25.00 202 225
TPR_8 Tetratricopeptide repeat 0.46 1 25.70 203 221
TPR_19 Tetratricopeptide repeat 0.2 2 25.00 215 255
PPR_2 PPR repeat family 7.9E-10 29 30.00 227 274
PPR_1 PPR repeat 0.041 4 23.80 228 251
PPR_3 Pentatricopeptide repeat domain 0.36 1 25.00 229 267
PPR PPR repeat 3.9E-08 23 25.00 229 256
TPR_14 Tetratricopeptide repeat 0.035 5 23.50 231 255
TPR_2 Tetratricopeptide repeat 0.00085 10 22.40 238 256
TPR_8 Tetratricopeptide repeat 0.023 5 25.70 238 258
TPR_1 Tetratricopeptide repeat 0.00093 9 20.40 238 255
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.087 3 27.20 240 255
PPR_long Pentacotripeptide-repeat region of PRORP 0.018 4 27.00 240 287
RNPP_C RNPP family C-terminal domain 0.48 0 26.50 296 328
PPR_2 PPR repeat family 0.34 1 30.00 297 330
Coatomer_E Coatomer epsilon subunit 0.081 2 20.40 301 327
PPR PPR repeat 0.0031 8 25.00 303 328
PPR_3 Pentatricopeptide repeat domain 3.2E-09 27 25.00 321 376
PPR_2 PPR repeat family 2.9E-14 43 30.00 330 374
PPR PPR repeat 1.1E-08 25 25.00 332 359
PPR_1 PPR repeat 0.0012 9 23.80 332 355
DYW_deaminase DYW family of nucleic acid deaminases 1 -1 31.60 334 361
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-07 19 27.00 346 421
PPR_1 PPR repeat 1.4E-05 15 23.80 358 391
PPR PPR repeat 9.2E-07 19 25.00 365 391
PPR_2 PPR repeat family 4.3E-05 14 30.00 369 409
PPR_3 Pentatricopeptide repeat domain 0.11 3 25.00 387 411
PPR_1 PPR repeat 3.6E-09 26 23.80 395 423
PPR_2 PPR repeat family 0.00024 11 30.00 398 424
PPR PPR repeat 1.5E-05 15 25.00 401 425
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0027 8 27.20 446 484
TPR_2 Tetratricopeptide repeat 0.4 1 22.40 446 465
TPR_8 Tetratricopeptide repeat 0.37 2 25.70 446 465
TPR_19 Tetratricopeptide repeat 0.022 5 25.00 451 484
TPR_2 Tetratricopeptide repeat 0.52 1 22.40 469 484
DYW_deaminase DYW family of nucleic acid deaminases 0 123 31.60 502 624

635

PPR
RNPP_C
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
Vps39_1
PPR_long
PPR
PPR_3
RNPP_C
Coatomer_E
PPR_1
PPR
PPR_2
Vps39_1
TPR_14
TPR_19
TPR_8
TPR_19
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_2
TPR_8
TPR_1
ANAPC3
PPR_long
RNPP_C
PPR_2
Coatomer_E
PPR
PPR_3
PPR_2
PPR
PPR_1
DYW_deaminase
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
ANAPC3
TPR_2
TPR_8
TPR_19
TPR_2
DYW_deaminase

References:

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

ANAPC3

DYW_deaminase

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.23	2	25.00	68	89
RNPP_C	RNPP family C-terminal domain	1	-1	26.50	89	126
PPR_3	Pentatricopeptide repeat domain	0.031	5	25.00	91	124
PPR_1	PPR repeat	6.1E-05	13	23.80	95	122
PPR_2	PPR repeat family	1.2E-05	16	30.00	95	127
PPR	PPR repeat	4.8E-08	23	25.00	100	126
PPR_1	PPR repeat	0.011	6	23.80	125	154
PPR_3	Pentatricopeptide repeat domain	6.6E-05	13	25.00	125	173
PPR_2	PPR repeat family	7.7E-12	35	30.00	127	172
PPR	PPR repeat	1.2E-10	31	25.00	128	158
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0051	7	21.40	129	156
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00077	9	27.00	138	225
PPR	PPR repeat	0.38	2	25.00	165	185
PPR_3	Pentatricopeptide repeat domain	0.00018	12	25.00	193	226
RNPP_C	RNPP family C-terminal domain	0.00079	9	26.50	193	263
Coatomer_E	Coatomer epsilon subunit	0.00047	10	20.40	201	272
PPR_1	PPR repeat	4.5E-05	13	23.80	201	223
PPR	PPR repeat	3.5E-07	20	25.00	201	226
PPR_2	PPR repeat family	5.7E-06	17	30.00	201	227
Vps39_1	Vacuolar sorting protein 39 domain 1	0.2	2	21.40	202	226
TPR_14	Tetratricopeptide repeat	0.42	2	23.50	202	223
TPR_19	Tetratricopeptide repeat	0.51	1	25.00	202	225
TPR_8	Tetratricopeptide repeat	0.46	1	25.70	203	221
TPR_19	Tetratricopeptide repeat	0.2	2	25.00	215	255
PPR_2	PPR repeat family	7.9E-10	29	30.00	227	274
PPR_1	PPR repeat	0.041	4	23.80	228	251
PPR_3	Pentatricopeptide repeat domain	0.36	1	25.00	229	267
PPR	PPR repeat	3.9E-08	23	25.00	229	256
TPR_14	Tetratricopeptide repeat	0.035	5	23.50	231	255
TPR_2	Tetratricopeptide repeat	0.00085	10	22.40	238	256
TPR_8	Tetratricopeptide repeat	0.023	5	25.70	238	258
TPR_1	Tetratricopeptide repeat	0.00093	9	20.40	238	255
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.087	3	27.20	240	255
PPR_long	Pentacotripeptide-repeat region of PRORP	0.018	4	27.00	240	287
RNPP_C	RNPP family C-terminal domain	0.48	0	26.50	296	328
PPR_2	PPR repeat family	0.34	1	30.00	297	330
Coatomer_E	Coatomer epsilon subunit	0.081	2	20.40	301	327
PPR	PPR repeat	0.0031	8	25.00	303	328
PPR_3	Pentatricopeptide repeat domain	3.2E-09	27	25.00	321	376
PPR_2	PPR repeat family	2.9E-14	43	30.00	330	374
PPR	PPR repeat	1.1E-08	25	25.00	332	359
PPR_1	PPR repeat	0.0012	9	23.80	332	355
DYW_deaminase	DYW family of nucleic acid deaminases	1	-1	31.60	334	361
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-07	19	27.00	346	421
PPR_1	PPR repeat	1.4E-05	15	23.80	358	391
PPR	PPR repeat	9.2E-07	19	25.00	365	391
PPR_2	PPR repeat family	4.3E-05	14	30.00	369	409
PPR_3	Pentatricopeptide repeat domain	0.11	3	25.00	387	411
PPR_1	PPR repeat	3.6E-09	26	23.80	395	423
PPR_2	PPR repeat family	0.00024	11	30.00	398	424
PPR	PPR repeat	1.5E-05	15	25.00	401	425
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0027	8	27.20	446	484
TPR_2	Tetratricopeptide repeat	0.4	1	22.40	446	465
TPR_8	Tetratricopeptide repeat	0.37	2	25.70	446	465
TPR_19	Tetratricopeptide repeat	0.022	5	25.00	451	484
TPR_2	Tetratricopeptide repeat	0.52	1	22.40	469	484
DYW_deaminase	DYW family of nucleic acid deaminases	0	123	31.60	502	624