c2pfam

AT1G03090.1 :

Domain Description Evalue Bits GA Start End
Biotin_carb_N Biotin carboxylase, N-terminal domain 0 149 25.50 38 146
ATPgrasp_ST Sugar-transfer associated ATP-grasp 6.7E-06 15 31.40 147 210
ATPgrasp_TupA TupA-like ATPgrasp 0.0001 12 25.00 149 213
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain 0 147 19.80 151 281
ATP-grasp ATP-grasp domain 4.5E-07 20 20.50 176 281
Dala_Dala_lig_C D-ala D-ala ligase C-terminus 4.8E-09 26 21.00 176 263
ATP-grasp_3 ATP-grasp domain 2E-05 15 23.20 180 214
ATP-grasp_4 ATP-grasp domain 7.8E-05 12 27.00 187 239
POTRA_TamA_1 POTRA domain TamA domain 1 0.00032 11 26.00 267 299
Dala_Dala_lig_C D-ala D-ala ligase C-terminus 0.027 4 21.00 270 308
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain 3.9E-24 75 19.80 281 339
Biotin_carb_C Biotin carboxylase C-terminal domain 3.7E-38 120 20.70 353 460
RnfC_N RnfC Barrel sandwich hybrid domain 2.4E-05 14 25.60 640 699
Biotin_lipoyl Biotin-requiring enzyme 1.7E-19 60 22.10 646 712
Biotin_lipoyl_2 Biotin-lipoyl like 3.1E-06 17 23.30 646 681
HlyD_3 HlyD family secretion protein 0.0046 8 22.20 646 676
HlyD_D23 Barrel-sandwich domain of CusB or HlyD membrane-fusion 0.032 3 30.00 647 676
HlyD_D23 Barrel-sandwich domain of CusB or HlyD membrane-fusion 1.4E-05 14 30.00 681 713
HlyD_3 HlyD family secretion protein 5.8E-05 14 22.20 683 712
Biotin_lipoyl_2 Biotin-lipoyl like 4.8E-06 16 23.30 684 712

714

Biotin_carb_N
ATPgrasp_ST
ATPgrasp_TupA
CPSase_L_D2
ATP-grasp
Dala_Dala_lig_C
ATP-grasp_3
ATP-grasp_4
POTRA_TamA_1
Dala_Dala_lig_C
CPSase_L_D2
Biotin_carb_C
RnfC_N
Biotin_lipoyl
Biotin_lipoyl_2
HlyD_3
HlyD_D23
HlyD_D23
HlyD_3
Biotin_lipoyl_2

References:

Biotin_carb_N

POTRA_TamA_1

HlyD_3

Biotin_lipoyl

Biotin_carb_C
7915138 Three-dimensional structure of the biotin carboxylase subunit. of acetyl-CoA carboxylase. Biochemistry 1994;33:10249-10256.

CPSase_L_D2
7915138 Three-dimensional structure of the biotin carboxylase subunit. of acetyl-CoA carboxylase. Biochemistry 1994;33:10249-10256.
1972379 Mammalian carbamyl phosphate synthetase (CPS). DNA sequence and evolution of the CPS domain of the Syrian hamster multifunctional protein CAD. Biol Chem 1990;265:10395-10402.
10089390 The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr D Biol Crystallogr 1999;55:8-24.

ATP-grasp_3

ATP-grasp
9416615 A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity. Protein Sci 1997;6:2639-2643.

ATPgrasp_TupA

ATPgrasp_ST

Dala_Dala_lig_C
9054558 D-alanine:D-alanine ligase: phosphonate and phosphinate intermediates with wild type and the Y216F mutant. Biochemistry 1997;36:2531-2538.
10908650 The molecular basis of vancomycin resistance in clinically relevant Enterococci: crystal structure of D-alanyl-D-lactate ligase (VanA). Proc Natl Acad Sci U S A 2000;97:8921-8925.
12499203 Roles of Mycobacterium smegmatis D-alanine:D-alanine ligase and D-alanine racemase in the mechanisms of action of and resistance to the peptidoglycan inhibitor D-cycloserine. Antimicrob Agents Chemother 2003;47:283-291.

ATP-grasp_4

Biotin_lipoyl_2

RnfC_N

HlyD_D23

Domain	Description	Evalue	Bits	GA	Start	End
Biotin_carb_N	Biotin carboxylase, N-terminal domain	0	149	25.50	38	146
ATPgrasp_ST	Sugar-transfer associated ATP-grasp	6.7E-06	15	31.40	147	210
ATPgrasp_TupA	TupA-like ATPgrasp	0.0001	12	25.00	149	213
CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	0	147	19.80	151	281
ATP-grasp	ATP-grasp domain	4.5E-07	20	20.50	176	281
Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	4.8E-09	26	21.00	176	263
ATP-grasp_3	ATP-grasp domain	2E-05	15	23.20	180	214
ATP-grasp_4	ATP-grasp domain	7.8E-05	12	27.00	187	239
POTRA_TamA_1	POTRA domain TamA domain 1	0.00032	11	26.00	267	299
Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	0.027	4	21.00	270	308
CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	3.9E-24	75	19.80	281	339
Biotin_carb_C	Biotin carboxylase C-terminal domain	3.7E-38	120	20.70	353	460
RnfC_N	RnfC Barrel sandwich hybrid domain	2.4E-05	14	25.60	640	699
Biotin_lipoyl	Biotin-requiring enzyme	1.7E-19	60	22.10	646	712
Biotin_lipoyl_2	Biotin-lipoyl like	3.1E-06	17	23.30	646	681
HlyD_3	HlyD family secretion protein	0.0046	8	22.20	646	676
HlyD_D23	Barrel-sandwich domain of CusB or HlyD membrane-fusion	0.032	3	30.00	647	676
HlyD_D23	Barrel-sandwich domain of CusB or HlyD membrane-fusion	1.4E-05	14	30.00	681	713
HlyD_3	HlyD family secretion protein	5.8E-05	14	22.20	683	712
Biotin_lipoyl_2	Biotin-lipoyl like	4.8E-06	16	23.30	684	712