c2pfam

AT5G06420.1 :

Domain Description Evalue Bits GA Start End
DTHCT DTHCT (NUC029) region 0.012 6 19.70 72 106
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1.1E-12 38 20.50 236 261
zf-CCCH_4 CCCH-type zinc finger 2.9E-07 20 24.60 240 261
zf-CCCH_2 RNA-binding, Nab2-type zinc finger 2E-05 15 25.80 240 260
zf_CCCH_4 Zinc finger domain 7.3E-09 26 29.00 241 260
DTHCT DTHCT (NUC029) region 0.00031 12 19.70 263 307
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0022 8 20.70 310 349
zf-RING_10 zinc RING finger of MSL2 1.2E-05 16 31.00 311 351
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3E-11 33 27.00 311 353
zf-RING_2 Ring finger domain 1.4E-07 22 27.30 311 350
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.8E-07 20 21.00 312 349
zf-RING_5 zinc-RING finger domain 8.2E-09 26 27.90 312 351
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 9.4E-08 22 27.00 312 349
zf-C3HC4_4 zinc finger of C3HC4-type, RING 3.6E-05 14 30.00 312 350
Prok-RING_4 Prokaryotic RING finger family 4 0.0014 9 27.00 312 351
zf-RING_UBOX RING-type zinc-finger 2.1E-06 18 25.20 312 346
zf-CCCH_4 CCCH-type zinc finger 1 -1 24.60 327 335

378

DTHCT
zf-CCCH
zf-CCCH_4
zf-CCCH_2
zf_CCCH_4
DTHCT
zf-Nse
zf-RING_10
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-C3HC4_4
Prok-RING_4
zf-RING_UBOX
zf-CCCH_4

References:

zf-C3HC4_4

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Prok-RING_4

zf_CCCH_4

zf-C3HC4_2

zf-RING_5

zf-CCCH_4

zf-RING_2

zf-CCCH_2

zf-RING_10

zf-C3HC4_3

zf-CCCH

zf-RING_UBOX

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

DTHCT
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

Domain	Description	Evalue	Bits	GA	Start	End
DTHCT	DTHCT (NUC029) region	0.012	6	19.70	72	106
zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	1.1E-12	38	20.50	236	261
zf-CCCH_4	CCCH-type zinc finger	2.9E-07	20	24.60	240	261
zf-CCCH_2	RNA-binding, Nab2-type zinc finger	2E-05	15	25.80	240	260
zf_CCCH_4	Zinc finger domain	7.3E-09	26	29.00	241	260
DTHCT	DTHCT (NUC029) region	0.00031	12	19.70	263	307
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0022	8	20.70	310	349
zf-RING_10	zinc RING finger of MSL2	1.2E-05	16	31.00	311	351
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3E-11	33	27.00	311	353
zf-RING_2	Ring finger domain	1.4E-07	22	27.30	311	350
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2.8E-07	20	21.00	312	349
zf-RING_5	zinc-RING finger domain	8.2E-09	26	27.90	312	351
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	9.4E-08	22	27.00	312	349
zf-C3HC4_4	zinc finger of C3HC4-type, RING	3.6E-05	14	30.00	312	350
Prok-RING_4	Prokaryotic RING finger family 4	0.0014	9	27.00	312	351
zf-RING_UBOX	RING-type zinc-finger	2.1E-06	18	25.20	312	346
zf-CCCH_4	CCCH-type zinc finger	1	-1	24.60	327	335