c2pfam

AT1G22640.1 :

Domain Description Evalue Bits GA Start End
SLIDE SLIDE 0.00044 9 20.80 13 40
Rap1_C Rap1 - C terminal domain 0.00021 10 21.00 13 47
Myb_DNA-bind_7 Myb DNA-binding like 0.29 0 31.00 13 33
Myb_DNA-binding Myb-like DNA-binding domain 3.9E-19 58 24.40 14 61
Myb_DNA-bind_2 Rap1 Myb domain 0.00022 10 20.30 16 31
Myb_DNA-bind_6 Myb-like DNA-binding domain 8.2E-16 47 22.90 17 75
SLIDE SLIDE 0.0042 6 20.80 60 86
Rap1_C Rap1 - C terminal domain 0.098 2 21.00 63 78
Myb_DNA-bind_2 Rap1 Myb domain 0.005 6 20.30 67 80
Myb_DNA-binding Myb-like DNA-binding domain 7E-20 60 24.40 67 111
Myb_DNA-bind_7 Myb DNA-binding like 0.00015 10 31.00 69 110
Myb_DNA-bind_6 Myb-like DNA-binding domain 1.4E-12 37 22.90 70 115

257

SLIDE
Rap1_C
Myb_DNA-bind_7
Myb_DNA-binding
Myb_DNA-bind_2
Myb_DNA-bind_6
SLIDE
Rap1_C
Myb_DNA-bind_2
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6

References:

Myb_DNA-bind_2
11545594 NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. J Mol Biol. 2001;312:167-175.

Myb_DNA-bind_7

Myb_DNA-binding
8882580 The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB. Trends Biochem Sci 1996;21:87-88.

Rap1_C
18538788 Structural and functional studies of the Rap1 C-terminus reveal novel separation-of-function mutants. J Mol Biol. 2008;380:520-531.

Myb_DNA-bind_6

SLIDE
14536084 Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol Cell. 2003;12:449-460.

Domain	Description	Evalue	Bits	GA	Start	End
SLIDE	SLIDE	0.00044	9	20.80	13	40
Rap1_C	Rap1 - C terminal domain	0.00021	10	21.00	13	47
Myb_DNA-bind_7	Myb DNA-binding like	0.29	0	31.00	13	33
Myb_DNA-binding	Myb-like DNA-binding domain	3.9E-19	58	24.40	14	61
Myb_DNA-bind_2	Rap1 Myb domain	0.00022	10	20.30	16	31
Myb_DNA-bind_6	Myb-like DNA-binding domain	8.2E-16	47	22.90	17	75
SLIDE	SLIDE	0.0042	6	20.80	60	86
Rap1_C	Rap1 - C terminal domain	0.098	2	21.00	63	78
Myb_DNA-bind_2	Rap1 Myb domain	0.005	6	20.30	67	80
Myb_DNA-binding	Myb-like DNA-binding domain	7E-20	60	24.40	67	111
Myb_DNA-bind_7	Myb DNA-binding like	0.00015	10	31.00	69	110
Myb_DNA-bind_6	Myb-like DNA-binding domain	1.4E-12	37	22.90	70	115