c2pfam

AT1G03110.1 :

Domain Description Evalue Bits GA Start End
CPSF_A CPSF A subunit region 0.0072 4 20.40 9 49
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 2.5E-05 13 22.90 41 108
eIF2A Eukaryotic translation initiation factor eIF2A 0.011 4 20.50 61 119
WD40 WD domain, G-beta repeat 2.6E-06 17 21.00 65 91
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 7E-05 11 29.50 81 104
Nup160 Nucleoporin Nup120/160 0.44 -2 19.20 84 102
WD40 WD domain, G-beta repeat 0.45 1 21.00 97 119
CPSF_A CPSF A subunit region 0.0029 6 20.40 105 134
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.066 1 29.50 144 180
WD40 WD domain, G-beta repeat 3.5E-07 20 21.00 152 181
eIF2A Eukaryotic translation initiation factor eIF2A 0.0037 6 20.50 156 181
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0069 6 22.90 158 182
CPSF_A CPSF A subunit region 0.06 1 20.40 158 188
WD40 WD domain, G-beta repeat 1.1E-06 18 21.00 199 235
Nup160 Nucleoporin Nup120/160 9.7E-06 13 19.20 209 268
CPSF_A CPSF A subunit region 0.027 2 20.40 218 249
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.017 4 22.90 222 249
WD40 WD domain, G-beta repeat 0.36 1 21.00 248 280
WD40 WD domain, G-beta repeat 0.43 1 21.00 311 333

427

CPSF_A
ANAPC4_WD40
eIF2A
WD40
Ge1_WD40
Nup160
WD40
CPSF_A
Ge1_WD40
WD40
eIF2A
ANAPC4_WD40
CPSF_A
WD40
Nup160
CPSF_A
ANAPC4_WD40
WD40
WD40

References:

ANAPC4_WD40

Ge1_WD40

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

CPSF_A
11421366 The 3'-end-processing factor CPSF is required for the splicing of single-intron pre-mRNAs in vivo. RNA 2001;7:920-931.

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

Domain	Description	Evalue	Bits	GA	Start	End
CPSF_A	CPSF A subunit region	0.0072	4	20.40	9	49
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	2.5E-05	13	22.90	41	108
eIF2A	Eukaryotic translation initiation factor eIF2A	0.011	4	20.50	61	119
WD40	WD domain, G-beta repeat	2.6E-06	17	21.00	65	91
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	7E-05	11	29.50	81	104
Nup160	Nucleoporin Nup120/160	0.44	-2	19.20	84	102
WD40	WD domain, G-beta repeat	0.45	1	21.00	97	119
CPSF_A	CPSF A subunit region	0.0029	6	20.40	105	134
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.066	1	29.50	144	180
WD40	WD domain, G-beta repeat	3.5E-07	20	21.00	152	181
eIF2A	Eukaryotic translation initiation factor eIF2A	0.0037	6	20.50	156	181
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0069	6	22.90	158	182
CPSF_A	CPSF A subunit region	0.06	1	20.40	158	188
WD40	WD domain, G-beta repeat	1.1E-06	18	21.00	199	235
Nup160	Nucleoporin Nup120/160	9.7E-06	13	19.20	209	268
CPSF_A	CPSF A subunit region	0.027	2	20.40	218	249
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.017	4	22.90	222	249
WD40	WD domain, G-beta repeat	0.36	1	21.00	248	280
WD40	WD domain, G-beta repeat	0.43	1	21.00	311	333