c2pfam

AT5G08310.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.46 -1 27.00 98 126
PPR PPR repeat 0.66 0 25.00 108 120
MNE1 Mitochondrial splicing apparatus component 0.0034 7 22.70 122 194
PPR PPR repeat 1.3E-05 15 25.00 147 172
PPR_2 PPR repeat family 2.5E-07 20 30.00 147 187
PPR_1 PPR repeat 0.00077 9 23.80 147 166
PPR_3 Pentatricopeptide repeat domain 5.5E-06 16 25.00 153 188
PPR_long Pentacotripeptide-repeat region of PRORP 7.2E-09 25 27.00 158 311
Mtf2 Mtf2 family 8.1E-05 12 27.00 160 224
PPR_1 PPR repeat 0.0004 10 23.80 173 185
PPR PPR repeat 0.53 0 25.00 179 191
PPR_2 PPR repeat family 0.022 5 30.00 202 226
PPR_3 Pentatricopeptide repeat domain 2.4E-05 14 25.00 202 240
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.017 3 25.90 208 256
PPR_1 PPR repeat 0.00091 9 23.80 209 239
ATP13 Mitochondrial ATPase expression 0.14 2 26.70 213 242
PPR_2 PPR repeat family 1.1E-05 15 30.00 215 244
PPR PPR repeat 2.8E-06 17 25.00 217 244
PPR PPR repeat 5.1E-06 16 25.00 252 279
PPR_2 PPR repeat family 1.8E-09 27 30.00 252 295
PPR_1 PPR repeat 1.9E-05 14 23.80 252 272
ATP13 Mitochondrial ATPase expression 0.67 -1 26.70 254 273
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.15 0 25.90 257 307
PPR_long Pentacotripeptide-repeat region of PRORP 2.6E-07 20 27.00 263 374
MNE1 Mitochondrial splicing apparatus component 0.35 0 22.70 266 292
PPR_3 Pentatricopeptide repeat domain 6.2E-08 22 25.00 271 326
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.27 -1 25.90 285 340
PPR_1 PPR repeat 6E-09 25 23.80 285 310
PPR PPR repeat 5.1E-10 29 25.00 285 313
PPR_2 PPR repeat family 6.5E-08 22 30.00 289 317
PPR_3 Pentatricopeptide repeat domain 2E-05 14 25.00 305 352
PPR_1 PPR repeat 0.00012 11 23.80 312 340
PPR_2 PPR repeat family 1.3E-09 28 30.00 317 352
PPR PPR repeat 1.3E-08 24 25.00 321 349
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0061 7 26.10 329 388
Mtf2 Mtf2 family 1 -2 27.00 332 349
PPR PPR repeat 0.02 5 25.00 389 410
PPR_2 PPR repeat family 0.53 0 30.00 389 409
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.024 5 26.10 401 485
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00059 8 25.90 408 496
ATP13 Mitochondrial ATPase expression 0.0026 7 26.70 423 467
PPR_long Pentacotripeptide-repeat region of PRORP 0.00023 10 27.00 432 509
PPR_1 PPR repeat 0.00041 10 23.80 435 464
PPR_2 PPR repeat family 3.7E-05 13 30.00 438 472
PPR PPR repeat 2E-05 14 25.00 442 470
PPR_3 Pentatricopeptide repeat domain 2.7E-08 23 25.00 461 518
PPR_1 PPR repeat 3.3E-09 26 23.80 469 501
PPR_2 PPR repeat family 1.6E-13 40 30.00 476 516
PPR PPR repeat 1.8E-09 27 25.00 476 505
Mtf2 Mtf2 family 0.22 1 27.00 494 513
PPR_1 PPR repeat 0.36 0 23.80 504 515
MNE1 Mitochondrial splicing apparatus component 0.023 4 22.70 508 549
PPR_2 PPR repeat family 0.025 4 30.00 518 555
PPR PPR repeat 0.052 4 25.00 518 539
PPR_1 PPR repeat 0.0094 5 23.80 549 568
PPR PPR repeat 0.11 3 25.00 550 574
PPR_2 PPR repeat family 3.3E-09 26 30.00 580 626
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-08 22 27.00 582 691
PPR PPR repeat 0.0089 6 25.00 583 609
PPR_3 Pentatricopeptide repeat domain 4.6E-09 26 25.00 601 657
PPR_1 PPR repeat 2E-08 23 23.80 608 641
PPR_2 PPR repeat family 1.5E-17 53 30.00 612 661
PPR PPR repeat 6.6E-08 22 25.00 616 645
MNE1 Mitochondrial splicing apparatus component 0.69 -1 22.70 616 657
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.051 2 25.90 617 680
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.34 1 26.10 629 629
ATP13 Mitochondrial ATPase expression 0.17 1 26.70 643 674
PPR_1 PPR repeat 7.1E-12 34 23.80 643 667
PPR PPR repeat 7.9E-08 22 25.00 651 677
PPR_3 Pentatricopeptide repeat domain 5.2E-09 26 25.00 680 727
PPR_1 PPR repeat 6.2E-11 31 23.80 681 710
PPR_2 PPR repeat family 1.8E-17 53 30.00 682 731
PPR PPR repeat 4E-09 26 25.00 685 715
PPR_long Pentacotripeptide-repeat region of PRORP 0.0019 7 27.00 707 798
PPR_1 PPR repeat 2.6E-10 29 23.80 713 746
PPR_2 PPR repeat family 3.3E-10 30 30.00 717 764
PPR PPR repeat 7.9E-09 25 25.00 720 748
PPR_3 Pentatricopeptide repeat domain 0.00093 9 25.00 742 796
ATP13 Mitochondrial ATPase expression 0.035 4 26.70 747 780
PPR_1 PPR repeat 0.047 3 23.80 749 781
PPR_2 PPR repeat family 0.00043 10 30.00 752 787
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.39 -1 25.90 752 791
PPR PPR repeat 0.00076 9 25.00 756 784

832

PPR_long
PPR
MNE1
PPR
PPR_2
PPR_1
PPR_3
PPR_long
Mtf2
PPR_1
PPR
PPR_2
PPR_3
MRP-S27
PPR_1
ATP13
PPR_2
PPR
PPR
PPR_2
PPR_1
ATP13
MRP-S27
PPR_long
MNE1
PPR_3
MRP-S27
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
RPM2
Mtf2
PPR
PPR_2
RPM2
MRP-S27
ATP13
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
Mtf2
PPR_1
MNE1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_long
PPR
PPR_3
PPR_1
PPR_2
PPR
MNE1
MRP-S27
RPM2
ATP13
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
ATP13
PPR_1
PPR_2
MRP-S27
PPR

References:

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

Mtf2

PPR_long

PPR_3

PPR_2

PPR_1

MNE1

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.46	-1	27.00	98	126
PPR	PPR repeat	0.66	0	25.00	108	120
MNE1	Mitochondrial splicing apparatus component	0.0034	7	22.70	122	194
PPR	PPR repeat	1.3E-05	15	25.00	147	172
PPR_2	PPR repeat family	2.5E-07	20	30.00	147	187
PPR_1	PPR repeat	0.00077	9	23.80	147	166
PPR_3	Pentatricopeptide repeat domain	5.5E-06	16	25.00	153	188
PPR_long	Pentacotripeptide-repeat region of PRORP	7.2E-09	25	27.00	158	311
Mtf2	Mtf2 family	8.1E-05	12	27.00	160	224
PPR_1	PPR repeat	0.0004	10	23.80	173	185
PPR	PPR repeat	0.53	0	25.00	179	191
PPR_2	PPR repeat family	0.022	5	30.00	202	226
PPR_3	Pentatricopeptide repeat domain	2.4E-05	14	25.00	202	240
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.017	3	25.90	208	256
PPR_1	PPR repeat	0.00091	9	23.80	209	239
ATP13	Mitochondrial ATPase expression	0.14	2	26.70	213	242
PPR_2	PPR repeat family	1.1E-05	15	30.00	215	244
PPR	PPR repeat	2.8E-06	17	25.00	217	244
PPR	PPR repeat	5.1E-06	16	25.00	252	279
PPR_2	PPR repeat family	1.8E-09	27	30.00	252	295
PPR_1	PPR repeat	1.9E-05	14	23.80	252	272
ATP13	Mitochondrial ATPase expression	0.67	-1	26.70	254	273
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.15	0	25.90	257	307
PPR_long	Pentacotripeptide-repeat region of PRORP	2.6E-07	20	27.00	263	374
MNE1	Mitochondrial splicing apparatus component	0.35	0	22.70	266	292
PPR_3	Pentatricopeptide repeat domain	6.2E-08	22	25.00	271	326
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.27	-1	25.90	285	340
PPR_1	PPR repeat	6E-09	25	23.80	285	310
PPR	PPR repeat	5.1E-10	29	25.00	285	313
PPR_2	PPR repeat family	6.5E-08	22	30.00	289	317
PPR_3	Pentatricopeptide repeat domain	2E-05	14	25.00	305	352
PPR_1	PPR repeat	0.00012	11	23.80	312	340
PPR_2	PPR repeat family	1.3E-09	28	30.00	317	352
PPR	PPR repeat	1.3E-08	24	25.00	321	349
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0061	7	26.10	329	388
Mtf2	Mtf2 family	1	-2	27.00	332	349
PPR	PPR repeat	0.02	5	25.00	389	410
PPR_2	PPR repeat family	0.53	0	30.00	389	409
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.024	5	26.10	401	485
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00059	8	25.90	408	496
ATP13	Mitochondrial ATPase expression	0.0026	7	26.70	423	467
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00023	10	27.00	432	509
PPR_1	PPR repeat	0.00041	10	23.80	435	464
PPR_2	PPR repeat family	3.7E-05	13	30.00	438	472
PPR	PPR repeat	2E-05	14	25.00	442	470
PPR_3	Pentatricopeptide repeat domain	2.7E-08	23	25.00	461	518
PPR_1	PPR repeat	3.3E-09	26	23.80	469	501
PPR_2	PPR repeat family	1.6E-13	40	30.00	476	516
PPR	PPR repeat	1.8E-09	27	25.00	476	505
Mtf2	Mtf2 family	0.22	1	27.00	494	513
PPR_1	PPR repeat	0.36	0	23.80	504	515
MNE1	Mitochondrial splicing apparatus component	0.023	4	22.70	508	549
PPR_2	PPR repeat family	0.025	4	30.00	518	555
PPR	PPR repeat	0.052	4	25.00	518	539
PPR_1	PPR repeat	0.0094	5	23.80	549	568
PPR	PPR repeat	0.11	3	25.00	550	574
PPR_2	PPR repeat family	3.3E-09	26	30.00	580	626
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-08	22	27.00	582	691
PPR	PPR repeat	0.0089	6	25.00	583	609
PPR_3	Pentatricopeptide repeat domain	4.6E-09	26	25.00	601	657
PPR_1	PPR repeat	2E-08	23	23.80	608	641
PPR_2	PPR repeat family	1.5E-17	53	30.00	612	661
PPR	PPR repeat	6.6E-08	22	25.00	616	645
MNE1	Mitochondrial splicing apparatus component	0.69	-1	22.70	616	657
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.051	2	25.90	617	680
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.34	1	26.10	629	629
ATP13	Mitochondrial ATPase expression	0.17	1	26.70	643	674
PPR_1	PPR repeat	7.1E-12	34	23.80	643	667
PPR	PPR repeat	7.9E-08	22	25.00	651	677
PPR_3	Pentatricopeptide repeat domain	5.2E-09	26	25.00	680	727
PPR_1	PPR repeat	6.2E-11	31	23.80	681	710
PPR_2	PPR repeat family	1.8E-17	53	30.00	682	731
PPR	PPR repeat	4E-09	26	25.00	685	715
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0019	7	27.00	707	798
PPR_1	PPR repeat	2.6E-10	29	23.80	713	746
PPR_2	PPR repeat family	3.3E-10	30	30.00	717	764
PPR	PPR repeat	7.9E-09	25	25.00	720	748
PPR_3	Pentatricopeptide repeat domain	0.00093	9	25.00	742	796
ATP13	Mitochondrial ATPase expression	0.035	4	26.70	747	780
PPR_1	PPR repeat	0.047	3	23.80	749	781
PPR_2	PPR repeat family	0.00043	10	30.00	752	787
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.39	-1	25.90	752	791
PPR	PPR repeat	0.00076	9	25.00	756	784