c2pfam

AT5G08490.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0055 7 30.00 61 96
PPR PPR repeat 3.7E-05 14 25.00 61 84
PPR_1 PPR repeat 0.032 4 23.80 62 82
PPR_2 PPR repeat family 0.00046 10 30.00 87 130
PPR_long Pentacotripeptide-repeat region of PRORP 1 -2 27.00 104 112
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.0035 7 29.10 154 176
Popeye Popeye protein conserved region 0.19 2 28.10 157 250
PPR PPR repeat 0.62 1 25.00 161 172
PRRSV_2b Porcine reproductive and respiratory syndrome virus 2b 0.0017 9 25.00 163 200
PPR_2 PPR repeat family 1.3E-10 31 30.00 187 228
PPR_1 PPR repeat 4.8E-05 13 23.80 188 215
PPR_3 Pentatricopeptide repeat domain 0.018 5 25.00 188 234
PPR PPR repeat 7.9E-06 16 25.00 190 217
PPR_long Pentacotripeptide-repeat region of PRORP 0.0075 5 27.00 201 238
PPR_3 Pentatricopeptide repeat domain 0.017 5 25.00 256 292
PPR_2 PPR repeat family 7.5E-06 16 30.00 263 292
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.097 2 29.10 264 275
PPR PPR repeat 2.5E-06 17 25.00 265 292
TPR_7 Tetratricopeptide repeat 0.00057 10 27.90 266 288
PPR_1 PPR repeat 0.009 6 23.80 267 289
RPN7 26S proteasome subunit RPN7 0.032 4 25.30 268 292
PPR_2 PPR repeat family 5.8E-09 26 30.00 292 337
PPR_1 PPR repeat 0.0076 6 23.80 293 318
PPR PPR repeat 7.2E-07 19 25.00 295 324
PPR_long Pentacotripeptide-repeat region of PRORP 0.42 -1 27.00 313 367
PPR_3 Pentatricopeptide repeat domain 0.24 1 25.00 316 348
Popeye Popeye protein conserved region 0.00062 10 28.10 354 404
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.079 2 29.10 364 377
PPR_2 PPR repeat family 0.042 4 30.00 366 395
PPR PPR repeat 0.00071 10 25.00 370 396
PPR_3 Pentatricopeptide repeat domain 0.036 4 25.00 370 408
RPN7 26S proteasome subunit RPN7 0.6 -1 25.30 370 394
PPR_2 PPR repeat family 0.003 8 30.00 395 441
PPR PPR repeat 0.48 1 25.00 398 408
PPR_long Pentacotripeptide-repeat region of PRORP 0.25 0 27.00 399 445
PPR_3 Pentatricopeptide repeat domain 0.8 0 25.00 419 446
RPN7 26S proteasome subunit RPN7 0.49 0 25.30 468 494
PPR_3 Pentatricopeptide repeat domain 9.8E-05 12 25.00 474 514
PPR_1 PPR repeat 0.0083 6 23.80 474 493
PPR PPR repeat 3.1E-05 14 25.00 474 494
PPR_2 PPR repeat family 0.0031 8 30.00 474 493
PPR_1 PPR repeat 2.5E-06 17 23.80 501 529
PPR_3 Pentatricopeptide repeat domain 0.00045 10 25.00 502 529
PPR_2 PPR repeat family 2E-07 21 30.00 502 529
PPR PPR repeat 2.4E-08 24 25.00 503 528
PPR_long Pentacotripeptide-repeat region of PRORP 0.1 2 27.00 518 580
PPR_2 PPR repeat family 2.5E-06 17 30.00 533 575
PPR PPR repeat 8.9E-06 16 25.00 535 563
PPR_3 Pentatricopeptide repeat domain 0.00097 9 25.00 555 589
RPN7 26S proteasome subunit RPN7 0.3 0 25.30 605 636
PPR_1 PPR repeat 0.022 4 23.80 607 625
PPR PPR repeat 0.00072 10 25.00 607 626
PPR_2 PPR repeat family 0.095 3 30.00 607 626
PPR_3 Pentatricopeptide repeat domain 3E-05 14 25.00 628 667
PPR_1 PPR repeat 0.025 4 23.80 632 659
PPR_2 PPR repeat family 3.3E-11 33 30.00 632 680
PPR PPR repeat 1.1E-07 22 25.00 634 664
RPN7 26S proteasome subunit RPN7 0.32 0 25.30 643 670
PPR_long Pentacotripeptide-repeat region of PRORP 4.8E-05 12 27.00 650 766
PPR_3 Pentatricopeptide repeat domain 9E-05 12 25.00 655 708
ATP13 Mitochondrial ATPase expression 0.00054 10 26.70 659 697
PPR_1 PPR repeat 0.0095 6 23.80 663 690
PPR PPR repeat 0.00028 11 25.00 672 694
PPR_1 PPR repeat 0.00066 9 23.80 699 730
PPR PPR repeat 0.85 0 25.00 715 730
PPR_2 PPR repeat family 0.95 0 30.00 734 753
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.67 -1 29.10 757 778
PPR_2 PPR repeat family 0.21 2 30.00 778 801
PPR PPR repeat 0.27 2 25.00 779 799
DYW_deaminase DYW family of nucleic acid deaminases 0.00014 12 31.60 806 844

849

PPR_2
PPR
PPR_1
PPR_2
PPR_long
Mso1_Sec1_bdg
Popeye
PPR
PRRSV_2b
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR_2
Mso1_Sec1_bdg
PPR
TPR_7
PPR_1
RPN7
PPR_2
PPR_1
PPR
PPR_long
PPR_3
Popeye
Mso1_Sec1_bdg
PPR_2
PPR
PPR_3
RPN7
PPR_2
PPR
PPR_long
PPR_3
RPN7
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
RPN7
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
RPN7
PPR_long
PPR_3
ATP13
PPR_1
PPR
PPR_1
PPR
PPR_2
Mso1_Sec1_bdg
PPR_2
PPR
DYW_deaminase

References:

TPR_7

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

Mso1_Sec1_bdg

Popeye
10882522 Isolation and characterization of the novel popeye gene family expressed in skeletal muscle and heart. Dev Biol 2000;223:371-382.

DYW_deaminase

ATP13

PRRSV_2b
11504553 A 10-kDa structural protein of porcine reproductive and respiratory syndrome virus encoded by ORF2b. Virology 2001;287:183-191.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0055	7	30.00	61	96
PPR	PPR repeat	3.7E-05	14	25.00	61	84
PPR_1	PPR repeat	0.032	4	23.80	62	82
PPR_2	PPR repeat family	0.00046	10	30.00	87	130
PPR_long	Pentacotripeptide-repeat region of PRORP	1	-2	27.00	104	112
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.0035	7	29.10	154	176
Popeye	Popeye protein conserved region	0.19	2	28.10	157	250
PPR	PPR repeat	0.62	1	25.00	161	172
PRRSV_2b	Porcine reproductive and respiratory syndrome virus 2b	0.0017	9	25.00	163	200
PPR_2	PPR repeat family	1.3E-10	31	30.00	187	228
PPR_1	PPR repeat	4.8E-05	13	23.80	188	215
PPR_3	Pentatricopeptide repeat domain	0.018	5	25.00	188	234
PPR	PPR repeat	7.9E-06	16	25.00	190	217
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0075	5	27.00	201	238
PPR_3	Pentatricopeptide repeat domain	0.017	5	25.00	256	292
PPR_2	PPR repeat family	7.5E-06	16	30.00	263	292
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.097	2	29.10	264	275
PPR	PPR repeat	2.5E-06	17	25.00	265	292
TPR_7	Tetratricopeptide repeat	0.00057	10	27.90	266	288
PPR_1	PPR repeat	0.009	6	23.80	267	289
RPN7	26S proteasome subunit RPN7	0.032	4	25.30	268	292
PPR_2	PPR repeat family	5.8E-09	26	30.00	292	337
PPR_1	PPR repeat	0.0076	6	23.80	293	318
PPR	PPR repeat	7.2E-07	19	25.00	295	324
PPR_long	Pentacotripeptide-repeat region of PRORP	0.42	-1	27.00	313	367
PPR_3	Pentatricopeptide repeat domain	0.24	1	25.00	316	348
Popeye	Popeye protein conserved region	0.00062	10	28.10	354	404
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.079	2	29.10	364	377
PPR_2	PPR repeat family	0.042	4	30.00	366	395
PPR	PPR repeat	0.00071	10	25.00	370	396
PPR_3	Pentatricopeptide repeat domain	0.036	4	25.00	370	408
RPN7	26S proteasome subunit RPN7	0.6	-1	25.30	370	394
PPR_2	PPR repeat family	0.003	8	30.00	395	441
PPR	PPR repeat	0.48	1	25.00	398	408
PPR_long	Pentacotripeptide-repeat region of PRORP	0.25	0	27.00	399	445
PPR_3	Pentatricopeptide repeat domain	0.8	0	25.00	419	446
RPN7	26S proteasome subunit RPN7	0.49	0	25.30	468	494
PPR_3	Pentatricopeptide repeat domain	9.8E-05	12	25.00	474	514
PPR_1	PPR repeat	0.0083	6	23.80	474	493
PPR	PPR repeat	3.1E-05	14	25.00	474	494
PPR_2	PPR repeat family	0.0031	8	30.00	474	493
PPR_1	PPR repeat	2.5E-06	17	23.80	501	529
PPR_3	Pentatricopeptide repeat domain	0.00045	10	25.00	502	529
PPR_2	PPR repeat family	2E-07	21	30.00	502	529
PPR	PPR repeat	2.4E-08	24	25.00	503	528
PPR_long	Pentacotripeptide-repeat region of PRORP	0.1	2	27.00	518	580
PPR_2	PPR repeat family	2.5E-06	17	30.00	533	575
PPR	PPR repeat	8.9E-06	16	25.00	535	563
PPR_3	Pentatricopeptide repeat domain	0.00097	9	25.00	555	589
RPN7	26S proteasome subunit RPN7	0.3	0	25.30	605	636
PPR_1	PPR repeat	0.022	4	23.80	607	625
PPR	PPR repeat	0.00072	10	25.00	607	626
PPR_2	PPR repeat family	0.095	3	30.00	607	626
PPR_3	Pentatricopeptide repeat domain	3E-05	14	25.00	628	667
PPR_1	PPR repeat	0.025	4	23.80	632	659
PPR_2	PPR repeat family	3.3E-11	33	30.00	632	680
PPR	PPR repeat	1.1E-07	22	25.00	634	664
RPN7	26S proteasome subunit RPN7	0.32	0	25.30	643	670
PPR_long	Pentacotripeptide-repeat region of PRORP	4.8E-05	12	27.00	650	766
PPR_3	Pentatricopeptide repeat domain	9E-05	12	25.00	655	708
ATP13	Mitochondrial ATPase expression	0.00054	10	26.70	659	697
PPR_1	PPR repeat	0.0095	6	23.80	663	690
PPR	PPR repeat	0.00028	11	25.00	672	694
PPR_1	PPR repeat	0.00066	9	23.80	699	730
PPR	PPR repeat	0.85	0	25.00	715	730
PPR_2	PPR repeat family	0.95	0	30.00	734	753
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.67	-1	29.10	757	778
PPR_2	PPR repeat family	0.21	2	30.00	778	801
PPR	PPR repeat	0.27	2	25.00	779	799
DYW_deaminase	DYW family of nucleic acid deaminases	0.00014	12	31.60	806	844