c2pfam

AT5G09450.1 :

Domain Description Evalue Bits GA Start End
TPR_12 Tetratricopeptide repeat 0.73 0 30.10 76 108
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.71 -1 28.10 85 101
TPR_14 Tetratricopeptide repeat 0.75 1 23.50 94 117
PPR_2 PPR repeat family 0.36 1 30.00 99 115
PPR_long Pentacotripeptide-repeat region of PRORP 4.9E-07 19 27.00 101 255
TPR_19 Tetratricopeptide repeat 4.4E-05 14 25.00 140 186
TPR_12 Tetratricopeptide repeat 0.00037 10 30.10 152 184
TPR_8 Tetratricopeptide repeat 0.00013 12 25.70 156 186
TPR_14 Tetratricopeptide repeat 0.00089 10 23.50 157 184
PPR_2 PPR repeat family 0.00041 10 30.00 157 181
PPR PPR repeat 1.4E-07 21 25.00 158 185
PPR_3 Pentatricopeptide repeat domain 3.6E-05 13 25.00 158 182
PPR_1 PPR repeat 0.0031 7 23.80 158 181
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.27 1 28.10 162 184
PPR_3 Pentatricopeptide repeat domain 8.7E-11 31 25.00 186 237
PPR PPR repeat 0.00025 11 25.00 193 222
PPR_2 PPR repeat family 7.6E-11 32 30.00 193 238
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.25 1 28.10 202 216
PPR_1 PPR repeat 0.0096 5 23.80 223 231
PPR PPR repeat 0.00014 12 25.00 228 254
PPR_3 Pentatricopeptide repeat domain 0.54 0 25.00 234 255
TPR_14 Tetratricopeptide repeat 0.72 1 23.50 235 268
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.32 0 28.10 243 256
TPR_19 Tetratricopeptide repeat 0.055 4 25.00 248 286
TPR_12 Tetratricopeptide repeat 0.097 3 30.10 320 356
PPR_long Pentacotripeptide-repeat region of PRORP 0.83 -2 27.00 335 362
PPR_3 Pentatricopeptide repeat domain 0.07 3 25.00 336 364
PPR PPR repeat 0.00017 11 25.00 336 363
PPR_2 PPR repeat family 0.048 3 30.00 336 362
TPR_14 Tetratricopeptide repeat 0.57 1 23.50 339 359
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0058 6 28.10 340 360
TPR_19 Tetratricopeptide repeat 0.3 1 25.00 344 363
PPR_1 PPR repeat 0.98 -1 23.80 348 360

409

TPR_12
SPOB_a
TPR_14
PPR_2
PPR_long
TPR_19
TPR_12
TPR_8
TPR_14
PPR_2
PPR
PPR_3
PPR_1
SPOB_a
PPR_3
PPR
PPR_2
SPOB_a
PPR_1
PPR
PPR_3
TPR_14
SPOB_a
TPR_19
TPR_12
PPR_long
PPR_3
PPR
PPR_2
TPR_14
SPOB_a
TPR_19
PPR_1

References:

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_19

SPOB_a

PPR_long

TPR_14

TPR_12

PPR_3

PPR_2

PPR_1

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_12	Tetratricopeptide repeat	0.73	0	30.10	76	108
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.71	-1	28.10	85	101
TPR_14	Tetratricopeptide repeat	0.75	1	23.50	94	117
PPR_2	PPR repeat family	0.36	1	30.00	99	115
PPR_long	Pentacotripeptide-repeat region of PRORP	4.9E-07	19	27.00	101	255
TPR_19	Tetratricopeptide repeat	4.4E-05	14	25.00	140	186
TPR_12	Tetratricopeptide repeat	0.00037	10	30.10	152	184
TPR_8	Tetratricopeptide repeat	0.00013	12	25.70	156	186
TPR_14	Tetratricopeptide repeat	0.00089	10	23.50	157	184
PPR_2	PPR repeat family	0.00041	10	30.00	157	181
PPR	PPR repeat	1.4E-07	21	25.00	158	185
PPR_3	Pentatricopeptide repeat domain	3.6E-05	13	25.00	158	182
PPR_1	PPR repeat	0.0031	7	23.80	158	181
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.27	1	28.10	162	184
PPR_3	Pentatricopeptide repeat domain	8.7E-11	31	25.00	186	237
PPR	PPR repeat	0.00025	11	25.00	193	222
PPR_2	PPR repeat family	7.6E-11	32	30.00	193	238
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.25	1	28.10	202	216
PPR_1	PPR repeat	0.0096	5	23.80	223	231
PPR	PPR repeat	0.00014	12	25.00	228	254
PPR_3	Pentatricopeptide repeat domain	0.54	0	25.00	234	255
TPR_14	Tetratricopeptide repeat	0.72	1	23.50	235	268
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.32	0	28.10	243	256
TPR_19	Tetratricopeptide repeat	0.055	4	25.00	248	286
TPR_12	Tetratricopeptide repeat	0.097	3	30.10	320	356
PPR_long	Pentacotripeptide-repeat region of PRORP	0.83	-2	27.00	335	362
PPR_3	Pentatricopeptide repeat domain	0.07	3	25.00	336	364
PPR	PPR repeat	0.00017	11	25.00	336	363
PPR_2	PPR repeat family	0.048	3	30.00	336	362
TPR_14	Tetratricopeptide repeat	0.57	1	23.50	339	359
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0058	6	28.10	340	360
TPR_19	Tetratricopeptide repeat	0.3	1	25.00	344	363
PPR_1	PPR repeat	0.98	-1	23.80	348	360