c2pfam

AT5G09910.1 :

Domain Description Evalue Bits GA Start End
RsgA_GTPase RsgA GTPase 1.7E-06 18 30.00 9 45
MCM MCM2/3/5 family 9.6E-06 15 25.20 17 44
Sigma54_activat Sigma-54 interaction domain 0.00017 11 20.20 21 47
Arf ADP-ribosylation factor family 1.3E-08 25 20.30 22 121
Hpr_kinase_C HPr Serine kinase C-terminal domain 8.5E-05 12 25.60 23 49
DUF815 Protein of unknown function (DUF815) 0.00016 11 20.10 24 44
MMR_HSR1 GTPase of unknown function 1.2E-08 25 24.50 24 130
Gtr1_RagA Gtr1/RagA G protein conserved region 5.5E-07 19 20.10 24 130
Ras Ras family 6.4E-21 65 20.80 24 167
Roc Ras of Complex, Roc, domain of DAPkinase 2.5E-19 60 27.00 24 136
AAA_29 P-loop containing region of AAA domain 6.5E-05 13 27.00 24 39
ABC_tran ABC transporter 8.5E-05 13 23.10 24 45
SRPRB Signal recognition particle receptor beta subunit 2.8E-06 17 20.50 24 117
AAA_16 AAA ATPase domain 8E-06 16 32.60 25 44
Dynamin_N Dynamin family 0.00032 11 21.00 25 71
GTP_EFTU Elongation factor Tu GTP binding domain 0.00075 9 20.20 25 119

333

RsgA_GTPase
MCM
Sigma54_activat
Arf
Hpr_kinase_C
DUF815
MMR_HSR1
Gtr1_RagA
Ras
Roc
AAA_29
ABC_tran
SRPRB
AAA_16
Dynamin_N
GTP_EFTU

References:

DUF815

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

Hpr_kinase_C
9570401 A novel protein kinase that controls carbon catabolite repression in bacteria. Mol Microbiol 1998;27:1157-1169.
11904409 Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 A resolution: Mimicking the product/substrate of the phospho transfer reactions. Proc Natl Acad Sci U S A 2002;99:3458-3463.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

AAA_29

Roc

MCM
8332451 A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 1993;21:2541-2547.

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
RsgA_GTPase	RsgA GTPase	1.7E-06	18	30.00	9	45
MCM	MCM2/3/5 family	9.6E-06	15	25.20	17	44
Sigma54_activat	Sigma-54 interaction domain	0.00017	11	20.20	21	47
Arf	ADP-ribosylation factor family	1.3E-08	25	20.30	22	121
Hpr_kinase_C	HPr Serine kinase C-terminal domain	8.5E-05	12	25.60	23	49
DUF815	Protein of unknown function (DUF815)	0.00016	11	20.10	24	44
MMR_HSR1	GTPase of unknown function	1.2E-08	25	24.50	24	130
Gtr1_RagA	Gtr1/RagA G protein conserved region	5.5E-07	19	20.10	24	130
Ras	Ras family	6.4E-21	65	20.80	24	167
Roc	Ras of Complex, Roc, domain of DAPkinase	2.5E-19	60	27.00	24	136
AAA_29	P-loop containing region of AAA domain	6.5E-05	13	27.00	24	39
ABC_tran	ABC transporter	8.5E-05	13	23.10	24	45
SRPRB	Signal recognition particle receptor beta subunit	2.8E-06	17	20.50	24	117
AAA_16	AAA ATPase domain	8E-06	16	32.60	25	44
Dynamin_N	Dynamin family	0.00032	11	21.00	25	71
GTP_EFTU	Elongation factor Tu GTP binding domain	0.00075	9	20.20	25	119