c2pfam

AT5G09930.1 :

Domain Description Evalue Bits GA Start End
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.0057 7 23.10 94 127
RsgA_GTPase RsgA GTPase 0.058 4 30.00 97 136
ABC_tran ABC transporter 1.8E-27 88 23.10 99 274
IstB_IS21 IstB-like ATP binding protein 0.65 0 24.10 99 123
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain 0.011 6 20.30 101 143
AAA_29 P-loop containing region of AAA domain 0.0031 8 27.00 101 124
AAA_24 AAA domain 0.0096 7 27.00 110 128
MMR_HSR1 GTPase of unknown function 0.037 5 24.50 111 132
AAA_15 AAA ATPase domain 0.021 5 32.10 111 129
Roc Ras of Complex, Roc, domain of DAPkinase 0.16 3 27.00 111 131
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.15 3 20.50 111 132
Dynamin_N Dynamin family 0.074 4 21.00 112 196
AAA_18 AAA domain 0.05 5 29.40 112 132
AAA_14 AAA domain 0.29 2 27.00 112 134
AAA_28 AAA domain 0.092 4 27.00 112 156
SMC_N RecF/RecN/SMC N terminal domain 0.23 2 40.00 112 124
AAA_16 AAA ATPase domain 0.0039 9 32.60 112 212
AAA_30 AAA domain 0.0019 9 27.00 112 150
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0015 9 27.00 113 130
AAA_23 AAA domain 0.015 7 27.00 113 130
cobW CobW/HypB/UreG, nucleotide-binding domain 0.03 5 20.70 113 136
Rad17 Rad17 cell cycle checkpoint protein 0.27 2 19.70 114 198
NACHT NACHT domain 0.19 3 20.40 114 129
AAA ATPase family associated with various cellular activities (AAA) 0.0036 9 20.80 114 232
AAA_22 AAA domain 0.029 6 27.00 114 209
AAA_33 AAA domain 0.049 5 27.00 114 127
ATPase_2 ATPase domain predominantly from Archaea 0.47 1 33.20 116 201
Thymidylate_kin Thymidylate kinase 0.0072 7 21.10 116 130
AAA_23 AAA domain 0.078 4 27.00 173 232
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00084 10 27.00 213 283
SMC_N RecF/RecN/SMC N terminal domain 0.18 2 40.00 266 313
ABC_tran_Xtn ABC transporter 2.2E-22 70 25.90 313 400
AAA_15 AAA ATPase domain 0.84 0 32.10 339 407
AAA_23 AAA domain 0.058 5 27.00 341 394
IstB_IS21 IstB-like ATP binding protein 2.6E-05 15 24.10 354 452
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.038 4 23.10 425 459
AAA_29 P-loop containing region of AAA domain 2.3E-06 18 27.00 426 453
ABC_tran ABC transporter 1.3E-29 95 23.10 427 558
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain 0.00075 10 20.30 431 458
AAA_25 AAA domain 0.0024 8 27.00 433 453
AAA_16 AAA ATPase domain 5.2E-05 15 32.60 435 497
RsgA_GTPase RsgA GTPase 0.00073 10 30.00 436 459
AAA_24 AAA domain 0.00099 10 27.00 437 456
MMR_HSR1 GTPase of unknown function 0.00087 10 24.50 438 458
AAA_28 AAA domain 6.9E-05 14 27.00 438 491
AAA_30 AAA domain 0.00098 10 27.00 438 582
SMC_N RecF/RecN/SMC N terminal domain 3.3E-10 31 40.00 438 599
AAA_15 AAA ATPase domain 2.7E-05 15 32.10 438 456
ATPase_2 ATPase domain predominantly from Archaea 0.00061 11 33.20 438 462
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.0064 7 20.50 438 459
Roc Ras of Complex, Roc, domain of DAPkinase 0.0071 8 27.00 438 458
NACHT NACHT domain 0.00036 12 20.40 439 457
Dynamin_N Dynamin family 0.0046 8 21.00 439 468
AAA_14 AAA domain 0.0003 12 27.00 439 486
AAA_18 AAA domain 0.0018 10 29.40 439 460
AAA_22 AAA domain 0.00032 12 27.00 439 570
AAA_33 AAA domain 0.00089 10 27.00 440 481
AAA ATPase family associated with various cellular activities (AAA) 0.0017 10 20.80 440 458
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 9.6E-07 20 27.00 440 459
AAA_23 AAA domain 2.4E-05 16 27.00 440 456
Rad17 Rad17 cell cycle checkpoint protein 0.00098 10 19.70 440 456
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0021 9 20.70 440 472
Thymidylate_kin Thymidylate kinase 1 0 21.10 443 457
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0045 8 27.00 545 562
ABC_tran_Xtn ABC transporter 0.0035 8 25.90 597 669
Thymidylate_kin Thymidylate kinase 0.38 1 21.10 610 669
AAA_23 AAA domain 0.66 1 27.00 613 657

678

MeaB
RsgA_GTPase
ABC_tran
IstB_IS21
ATP-synt_ab
AAA_29
AAA_24
MMR_HSR1
AAA_15
Roc
PduV-EutP
Dynamin_N
AAA_18
AAA_14
AAA_28
SMC_N
AAA_16
AAA_30
AAA_21
AAA_23
cobW
Rad17
NACHT
AAA
AAA_22
AAA_33
ATPase_2
Thymidylate_kin
AAA_23
AAA_21
SMC_N
ABC_tran_Xtn
AAA_15
AAA_23
IstB_IS21
MeaB
AAA_29
ABC_tran
ATP-synt_ab
AAA_25
AAA_16
RsgA_GTPase
AAA_24
MMR_HSR1
AAA_28
AAA_30
SMC_N
AAA_15
ATPase_2
PduV-EutP
Roc
NACHT
Dynamin_N
AAA_14
AAA_18
AAA_22
AAA_33
AAA
AAA_21
AAA_23
Rad17
cobW
Thymidylate_kin
AAA_21
ABC_tran_Xtn
Thymidylate_kin
AAA_23

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Thymidylate_kin

RsgA_GTPase

ABC_tran_Xtn

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

IstB_IS21

MeaB

ATPase_2

ATP-synt_ab
8065448 Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature 1994;370:621-628.
9261073 The crystal structure of the nucleotide-free alpha 3 beta 3 subcomplex of F1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer. Structure 1997;5:825-836.

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_18

AAA_16

AAA_15

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.0057	7	23.10	94	127
RsgA_GTPase	RsgA GTPase	0.058	4	30.00	97	136
ABC_tran	ABC transporter	1.8E-27	88	23.10	99	274
IstB_IS21	IstB-like ATP binding protein	0.65	0	24.10	99	123
ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	0.011	6	20.30	101	143
AAA_29	P-loop containing region of AAA domain	0.0031	8	27.00	101	124
AAA_24	AAA domain	0.0096	7	27.00	110	128
MMR_HSR1	GTPase of unknown function	0.037	5	24.50	111	132
AAA_15	AAA ATPase domain	0.021	5	32.10	111	129
Roc	Ras of Complex, Roc, domain of DAPkinase	0.16	3	27.00	111	131
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.15	3	20.50	111	132
Dynamin_N	Dynamin family	0.074	4	21.00	112	196
AAA_18	AAA domain	0.05	5	29.40	112	132
AAA_14	AAA domain	0.29	2	27.00	112	134
AAA_28	AAA domain	0.092	4	27.00	112	156
SMC_N	RecF/RecN/SMC N terminal domain	0.23	2	40.00	112	124
AAA_16	AAA ATPase domain	0.0039	9	32.60	112	212
AAA_30	AAA domain	0.0019	9	27.00	112	150
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0015	9	27.00	113	130
AAA_23	AAA domain	0.015	7	27.00	113	130
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.03	5	20.70	113	136
Rad17	Rad17 cell cycle checkpoint protein	0.27	2	19.70	114	198
NACHT	NACHT domain	0.19	3	20.40	114	129
AAA	ATPase family associated with various cellular activities (AAA)	0.0036	9	20.80	114	232
AAA_22	AAA domain	0.029	6	27.00	114	209
AAA_33	AAA domain	0.049	5	27.00	114	127
ATPase_2	ATPase domain predominantly from Archaea	0.47	1	33.20	116	201
Thymidylate_kin	Thymidylate kinase	0.0072	7	21.10	116	130
AAA_23	AAA domain	0.078	4	27.00	173	232
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00084	10	27.00	213	283
SMC_N	RecF/RecN/SMC N terminal domain	0.18	2	40.00	266	313
ABC_tran_Xtn	ABC transporter	2.2E-22	70	25.90	313	400
AAA_15	AAA ATPase domain	0.84	0	32.10	339	407
AAA_23	AAA domain	0.058	5	27.00	341	394
IstB_IS21	IstB-like ATP binding protein	2.6E-05	15	24.10	354	452
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.038	4	23.10	425	459
AAA_29	P-loop containing region of AAA domain	2.3E-06	18	27.00	426	453
ABC_tran	ABC transporter	1.3E-29	95	23.10	427	558
ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	0.00075	10	20.30	431	458
AAA_25	AAA domain	0.0024	8	27.00	433	453
AAA_16	AAA ATPase domain	5.2E-05	15	32.60	435	497
RsgA_GTPase	RsgA GTPase	0.00073	10	30.00	436	459
AAA_24	AAA domain	0.00099	10	27.00	437	456
MMR_HSR1	GTPase of unknown function	0.00087	10	24.50	438	458
AAA_28	AAA domain	6.9E-05	14	27.00	438	491
AAA_30	AAA domain	0.00098	10	27.00	438	582
SMC_N	RecF/RecN/SMC N terminal domain	3.3E-10	31	40.00	438	599
AAA_15	AAA ATPase domain	2.7E-05	15	32.10	438	456
ATPase_2	ATPase domain predominantly from Archaea	0.00061	11	33.20	438	462
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.0064	7	20.50	438	459
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0071	8	27.00	438	458
NACHT	NACHT domain	0.00036	12	20.40	439	457
Dynamin_N	Dynamin family	0.0046	8	21.00	439	468
AAA_14	AAA domain	0.0003	12	27.00	439	486
AAA_18	AAA domain	0.0018	10	29.40	439	460
AAA_22	AAA domain	0.00032	12	27.00	439	570
AAA_33	AAA domain	0.00089	10	27.00	440	481
AAA	ATPase family associated with various cellular activities (AAA)	0.0017	10	20.80	440	458
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	9.6E-07	20	27.00	440	459
AAA_23	AAA domain	2.4E-05	16	27.00	440	456
Rad17	Rad17 cell cycle checkpoint protein	0.00098	10	19.70	440	456
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0021	9	20.70	440	472
Thymidylate_kin	Thymidylate kinase	1	0	21.10	443	457
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0045	8	27.00	545	562
ABC_tran_Xtn	ABC transporter	0.0035	8	25.90	597	669
Thymidylate_kin	Thymidylate kinase	0.38	1	21.10	610	669
AAA_23	AAA domain	0.66	1	27.00	613	657