c2pfam

AT5G09950.1 :

Domain Description Evalue Bits GA Start End
TPR_19 Tetratricopeptide repeat 0.0061 7 25.00 33 65
PPR_2 PPR repeat family 2.8E-08 23 30.00 34 67
PPR_3 Pentatricopeptide repeat domain 2.2E-05 14 25.00 34 62
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.47 -2 25.90 35 66
PPR PPR repeat 1.3E-06 18 25.00 39 67
PPR_1 PPR repeat 0.036 3 23.80 40 62
PPR_1 PPR repeat 5.3E-06 16 23.80 66 94
PPR_2 PPR repeat family 2.6E-10 30 30.00 66 112
PPR PPR repeat 2.4E-08 24 25.00 68 98
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0044 7 21.40 70 96
TPR_14 Tetratricopeptide repeat 0.0042 8 23.50 70 95
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0026 6 25.90 73 108
PPR_long Pentacotripeptide-repeat region of PRORP 0.033 3 27.00 78 113
PPR_3 Pentatricopeptide repeat domain 0.024 4 25.00 90 112
PPR_3 Pentatricopeptide repeat domain 0.02 5 25.00 90 116
PPR_2 PPR repeat family 5.1E-13 39 30.00 169 217
PPR_3 Pentatricopeptide repeat domain 2.1E-08 24 25.00 170 214
PPR_1 PPR repeat 2.5E-05 14 23.80 170 197
PPR PPR repeat 4.5E-07 20 25.00 172 201
PPR_long Pentacotripeptide-repeat region of PRORP 8.7E-06 15 27.00 174 273
PPR_1 PPR repeat 0.11 2 23.80 201 217
PPR_3 Pentatricopeptide repeat domain 0.086 3 25.00 240 271
PPR_2 PPR repeat family 0.0039 7 30.00 249 273
PPR_1 PPR repeat 0.00069 9 23.80 249 270
PPR PPR repeat 5.8E-05 13 25.00 249 272
PPR_1 PPR repeat 0.29 1 23.80 273 300
PPR_2 PPR repeat family 1.3E-06 18 30.00 273 317
PPR PPR repeat 0.00012 12 25.00 275 301
PPR PPR repeat 0.0013 9 25.00 353 378
PPR_1 PPR repeat 0.0095 5 23.80 353 375
PPR_2 PPR repeat family 0.29 1 30.00 353 378
PPR_2 PPR repeat family 4.9E-08 23 30.00 378 425
PPR_1 PPR repeat 0.038 3 23.80 379 394
PPR PPR repeat 8.7E-07 19 25.00 381 410
PPR_3 Pentatricopeptide repeat domain 0.00049 10 25.00 443 488
PPR_2 PPR repeat family 0.0011 9 30.00 449 478
TPR_19 Tetratricopeptide repeat 0.084 3 25.00 453 482
PPR PPR repeat 6.4E-05 13 25.00 454 479
PPR_1 PPR repeat 0.31 0 23.80 480 493
PPR_2 PPR repeat family 8.6E-08 22 30.00 480 527
PPR PPR repeat 0.012 6 25.00 482 495
PPR_3 Pentatricopeptide repeat domain 0.28 1 25.00 507 562
PPR_3 Pentatricopeptide repeat domain 0.15 2 25.00 554 582
PPR_long Pentacotripeptide-repeat region of PRORP 0.95 -2 27.00 554 579
PPR_2 PPR repeat family 0.00026 11 30.00 556 581
PPR PPR repeat 1.7E-07 21 25.00 556 581
PPR_1 PPR repeat 0.01 5 23.80 556 578
PPR_1 PPR repeat 0.00033 10 23.80 583 607
PPR_2 PPR repeat family 2.4E-09 27 30.00 583 630
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.084 1 25.90 583 636
PPR PPR repeat 2.1E-07 21 25.00 585 611
PPR_3 Pentatricopeptide repeat domain 0.21 1 25.00 613 641
PPR_long Pentacotripeptide-repeat region of PRORP 0.25 0 27.00 622 652
PPR_1 PPR repeat 1.4E-05 14 23.80 650 680
PPR_2 PPR repeat family 0.00026 11 30.00 653 683
PPR PPR repeat 2.8E-05 14 25.00 658 683
PPR_1 PPR repeat 1.2E-08 24 23.80 684 712
PPR_2 PPR repeat family 8.6E-15 44 30.00 684 732
PPR_3 Pentatricopeptide repeat domain 5.8E-05 13 25.00 684 731
Vps39_1 Vacuolar sorting protein 39 domain 1 0.16 2 21.40 686 712
PPR PPR repeat 4.3E-13 38 25.00 686 715
TPR_14 Tetratricopeptide repeat 0.36 2 23.50 691 710
PPR_long Pentacotripeptide-repeat region of PRORP 0.00011 11 27.00 698 783
PPR_2 PPR repeat family 0.00062 10 30.00 719 755
PPR_1 PPR repeat 0.016 5 23.80 719 747
PPR PPR repeat 7.4E-05 13 25.00 722 749
PPR_1 PPR repeat 0.22 1 23.80 755 783
PPR PPR repeat 0.0017 8 25.00 759 784
PPR_3 Pentatricopeptide repeat domain 1 -1 25.00 781 799
PPR_1 PPR repeat 0.021 4 23.80 785 803
PPR_2 PPR repeat family 0.2 2 30.00 787 803
TPR_19 Tetratricopeptide repeat 0.69 0 25.00 815 843
PPR PPR repeat 0.16 2 25.00 828 854
DYW_deaminase DYW family of nucleic acid deaminases 0 141 31.60 861 985

995

TPR_19
PPR_2
PPR_3
MRP-S27
PPR
PPR_1
PPR_1
PPR_2
PPR
Vps39_1
TPR_14
MRP-S27
PPR_long
PPR_3
PPR_3
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR_2
PPR_1
PPR
PPR_3
PPR_2
TPR_19
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_long
PPR_2
PPR
PPR_1
PPR_1
PPR_2
MRP-S27
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR_3
Vps39_1
PPR
TPR_14
PPR_long
PPR_2
PPR_1
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
TPR_19
PPR
DYW_deaminase

References:

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

TPR_19

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_19	Tetratricopeptide repeat	0.0061	7	25.00	33	65
PPR_2	PPR repeat family	2.8E-08	23	30.00	34	67
PPR_3	Pentatricopeptide repeat domain	2.2E-05	14	25.00	34	62
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.47	-2	25.90	35	66
PPR	PPR repeat	1.3E-06	18	25.00	39	67
PPR_1	PPR repeat	0.036	3	23.80	40	62
PPR_1	PPR repeat	5.3E-06	16	23.80	66	94
PPR_2	PPR repeat family	2.6E-10	30	30.00	66	112
PPR	PPR repeat	2.4E-08	24	25.00	68	98
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0044	7	21.40	70	96
TPR_14	Tetratricopeptide repeat	0.0042	8	23.50	70	95
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0026	6	25.90	73	108
PPR_long	Pentacotripeptide-repeat region of PRORP	0.033	3	27.00	78	113
PPR_3	Pentatricopeptide repeat domain	0.024	4	25.00	90	112
PPR_3	Pentatricopeptide repeat domain	0.02	5	25.00	90	116
PPR_2	PPR repeat family	5.1E-13	39	30.00	169	217
PPR_3	Pentatricopeptide repeat domain	2.1E-08	24	25.00	170	214
PPR_1	PPR repeat	2.5E-05	14	23.80	170	197
PPR	PPR repeat	4.5E-07	20	25.00	172	201
PPR_long	Pentacotripeptide-repeat region of PRORP	8.7E-06	15	27.00	174	273
PPR_1	PPR repeat	0.11	2	23.80	201	217
PPR_3	Pentatricopeptide repeat domain	0.086	3	25.00	240	271
PPR_2	PPR repeat family	0.0039	7	30.00	249	273
PPR_1	PPR repeat	0.00069	9	23.80	249	270
PPR	PPR repeat	5.8E-05	13	25.00	249	272
PPR_1	PPR repeat	0.29	1	23.80	273	300
PPR_2	PPR repeat family	1.3E-06	18	30.00	273	317
PPR	PPR repeat	0.00012	12	25.00	275	301
PPR	PPR repeat	0.0013	9	25.00	353	378
PPR_1	PPR repeat	0.0095	5	23.80	353	375
PPR_2	PPR repeat family	0.29	1	30.00	353	378
PPR_2	PPR repeat family	4.9E-08	23	30.00	378	425
PPR_1	PPR repeat	0.038	3	23.80	379	394
PPR	PPR repeat	8.7E-07	19	25.00	381	410
PPR_3	Pentatricopeptide repeat domain	0.00049	10	25.00	443	488
PPR_2	PPR repeat family	0.0011	9	30.00	449	478
TPR_19	Tetratricopeptide repeat	0.084	3	25.00	453	482
PPR	PPR repeat	6.4E-05	13	25.00	454	479
PPR_1	PPR repeat	0.31	0	23.80	480	493
PPR_2	PPR repeat family	8.6E-08	22	30.00	480	527
PPR	PPR repeat	0.012	6	25.00	482	495
PPR_3	Pentatricopeptide repeat domain	0.28	1	25.00	507	562
PPR_3	Pentatricopeptide repeat domain	0.15	2	25.00	554	582
PPR_long	Pentacotripeptide-repeat region of PRORP	0.95	-2	27.00	554	579
PPR_2	PPR repeat family	0.00026	11	30.00	556	581
PPR	PPR repeat	1.7E-07	21	25.00	556	581
PPR_1	PPR repeat	0.01	5	23.80	556	578
PPR_1	PPR repeat	0.00033	10	23.80	583	607
PPR_2	PPR repeat family	2.4E-09	27	30.00	583	630
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.084	1	25.90	583	636
PPR	PPR repeat	2.1E-07	21	25.00	585	611
PPR_3	Pentatricopeptide repeat domain	0.21	1	25.00	613	641
PPR_long	Pentacotripeptide-repeat region of PRORP	0.25	0	27.00	622	652
PPR_1	PPR repeat	1.4E-05	14	23.80	650	680
PPR_2	PPR repeat family	0.00026	11	30.00	653	683
PPR	PPR repeat	2.8E-05	14	25.00	658	683
PPR_1	PPR repeat	1.2E-08	24	23.80	684	712
PPR_2	PPR repeat family	8.6E-15	44	30.00	684	732
PPR_3	Pentatricopeptide repeat domain	5.8E-05	13	25.00	684	731
Vps39_1	Vacuolar sorting protein 39 domain 1	0.16	2	21.40	686	712
PPR	PPR repeat	4.3E-13	38	25.00	686	715
TPR_14	Tetratricopeptide repeat	0.36	2	23.50	691	710
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00011	11	27.00	698	783
PPR_2	PPR repeat family	0.00062	10	30.00	719	755
PPR_1	PPR repeat	0.016	5	23.80	719	747
PPR	PPR repeat	7.4E-05	13	25.00	722	749
PPR_1	PPR repeat	0.22	1	23.80	755	783
PPR	PPR repeat	0.0017	8	25.00	759	784
PPR_3	Pentatricopeptide repeat domain	1	-1	25.00	781	799
PPR_1	PPR repeat	0.021	4	23.80	785	803
PPR_2	PPR repeat family	0.2	2	30.00	787	803
TPR_19	Tetratricopeptide repeat	0.69	0	25.00	815	843
PPR	PPR repeat	0.16	2	25.00	828	854
DYW_deaminase	DYW family of nucleic acid deaminases	0	141	31.60	861	985