c2pfam

AT5G10380.1 :

Domain Description Evalue Bits GA Start End
PRIMA1 Proline-rich membrane anchor 1 5.6E-06 17 27.60 25 45
Prok-RING_1 Prokaryotic RING finger family 1 1.2E-05 16 29.10 132 163
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.4E-08 25 27.00 133 180
FANCL_C FANCL C-terminal domain 0.00051 11 20.70 133 172
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 6.5E-05 13 27.30 134 174
zf-RING_5 zinc-RING finger domain 2.9E-08 24 27.90 134 177
zf-RING_2 Ring finger domain 6.3E-17 52 27.30 134 177
zf-RING_11 RING-like zinc finger 6.3E-15 45 27.00 134 163
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 4E-11 33 27.00 134 176
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.2E-09 28 21.00 135 176
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.5E-08 25 21.40 135 178
zf-RING_UBOX RING-type zinc-finger 4.9E-07 20 25.20 135 174
RINGv RING-variant domain 3.5E-05 14 21.60 135 176
zf-RING_4 RING/Ubox like zinc-binding domain 0.00021 12 27.00 135 179
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.00064 10 30.00 135 176
PHD PHD-finger 0.00098 9 27.90 135 168
Prok-RING_4 Prokaryotic RING finger family 4 0.00013 12 27.00 135 178
zf-rbx1 RING-H2 zinc finger domain 7.5E-12 36 31.00 138 177
zf-RING-like RING-like domain 0.02 6 21.60 153 176
Prok-RING_1 Prokaryotic RING finger family 1 0.61 1 29.10 171 178

301

PRIMA1
Prok-RING_1
zf-C3HC4_3
FANCL_C
Zn_ribbon_17
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
RINGv
zf-RING_4
zf-C3HC4_4
PHD
Prok-RING_4
zf-rbx1
zf-RING-like
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Prok-RING_4

zf-RING_4

RINGv

zf-ANAPC11

PRIMA1

zf-RING_UBOX

zf-RING_5

Zn_ribbon_17

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

zf-C3HC4_4

zf-C3HC4_3

zf-C3HC4_2

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
PRIMA1	Proline-rich membrane anchor 1	5.6E-06	17	27.60	25	45
Prok-RING_1	Prokaryotic RING finger family 1	1.2E-05	16	29.10	132	163
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.4E-08	25	27.00	133	180
FANCL_C	FANCL C-terminal domain	0.00051	11	20.70	133	172
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	6.5E-05	13	27.30	134	174
zf-RING_5	zinc-RING finger domain	2.9E-08	24	27.90	134	177
zf-RING_2	Ring finger domain	6.3E-17	52	27.30	134	177
zf-RING_11	RING-like zinc finger	6.3E-15	45	27.00	134	163
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	4E-11	33	27.00	134	176
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.2E-09	28	21.00	135	176
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.5E-08	25	21.40	135	178
zf-RING_UBOX	RING-type zinc-finger	4.9E-07	20	25.20	135	174
RINGv	RING-variant domain	3.5E-05	14	21.60	135	176
zf-RING_4	RING/Ubox like zinc-binding domain	0.00021	12	27.00	135	179
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.00064	10	30.00	135	176
PHD	PHD-finger	0.00098	9	27.90	135	168
Prok-RING_4	Prokaryotic RING finger family 4	0.00013	12	27.00	135	178
zf-rbx1	RING-H2 zinc finger domain	7.5E-12	36	31.00	138	177
zf-RING-like	RING-like domain	0.02	6	21.60	153	176
Prok-RING_1	Prokaryotic RING finger family 1	0.61	1	29.10	171	178