c2pfam

AT5G11310.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.015 4 23.80 138 157
PPR PPR repeat 0.013 5 25.00 138 157
PPR_2 PPR repeat family 0.0089 5 30.00 139 162
PPR_2 PPR repeat family 0.0045 6 30.00 175 197
PPR_1 PPR repeat 0.0033 6 23.80 175 197
PPR PPR repeat 0.0006 9 25.00 175 197
PPR_3 Pentatricopeptide repeat domain 0.84 -1 25.00 175 196
TPR_14 Tetratricopeptide repeat 0.07 3 23.50 179 197
PPR_long Pentacotripeptide-repeat region of PRORP 0.41 -1 27.00 215 263
PPR PPR repeat 0.00027 10 25.00 218 237
PPR_1 PPR repeat 0.0001 11 23.80 218 232
PPR_2 PPR repeat family 0.0044 6 30.00 218 232
PPR_1 PPR repeat 4.7E-09 25 23.80 247 277
PPR_2 PPR repeat family 1.3E-17 53 30.00 248 297
PPR_3 Pentatricopeptide repeat domain 4.1E-10 29 25.00 248 293
PPR PPR repeat 1.9E-07 20 25.00 252 280
PPR_long Pentacotripeptide-repeat region of PRORP 3.3E-08 22 27.00 267 319
PPR_3 Pentatricopeptide repeat domain 1.1E-12 37 25.00 272 330
PPR_1 PPR repeat 1.3E-15 46 23.80 280 312
PPR_2 PPR repeat family 2.5E-10 30 30.00 283 318
PPR PPR repeat 1.2E-09 27 25.00 286 313
PPR_1 PPR repeat 4.8E-06 15 23.80 317 344
PPR_2 PPR repeat family 0.0026 7 30.00 321 344
PPR PPR repeat 0.00013 11 25.00 323 345
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-06 16 27.00 349 439
PPR_2 PPR repeat family 6.1E-12 35 30.00 353 397
PPR_1 PPR repeat 6.4E-10 28 23.80 353 381
PPR_3 Pentatricopeptide repeat domain 3.8E-10 29 25.00 354 400
PPR PPR repeat 3.1E-09 26 25.00 356 386
PPR_1 PPR repeat 0.03 3 23.80 384 395
PPR_2 PPR repeat family 1E-10 31 30.00 388 436
PPR PPR repeat 0.00016 11 25.00 392 420
PPR_long Pentacotripeptide-repeat region of PRORP 5.8E-06 15 27.00 403 482
PPR_1 PPR repeat 1.1E-07 21 23.80 420 452
PPR_3 Pentatricopeptide repeat domain 4.8E-08 22 25.00 422 468
PPR PPR repeat 0.00011 12 25.00 427 456
PPR_2 PPR repeat family 6.9E-13 38 30.00 427 472
PPR_3 Pentatricopeptide repeat domain 7.4E-07 18 25.00 448 501
PPR_1 PPR repeat 1.1E-06 17 23.80 454 484
PPR_2 PPR repeat family 6.6E-07 19 30.00 462 504
PPR PPR repeat 0.00031 10 25.00 464 490
TPR_14 Tetratricopeptide repeat 0.091 3 23.50 465 489
PPR PPR repeat 0.37 1 25.00 497 517
NOG1_N NOG1 N-terminal helical domain 3.8E-05 13 22.90 511 562

602

PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR
PPR_3
TPR_14
PPR_long
PPR
PPR_1
PPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR_1
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_14
PPR
NOG1_N

References:

NOG1_N

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.015	4	23.80	138	157
PPR	PPR repeat	0.013	5	25.00	138	157
PPR_2	PPR repeat family	0.0089	5	30.00	139	162
PPR_2	PPR repeat family	0.0045	6	30.00	175	197
PPR_1	PPR repeat	0.0033	6	23.80	175	197
PPR	PPR repeat	0.0006	9	25.00	175	197
PPR_3	Pentatricopeptide repeat domain	0.84	-1	25.00	175	196
TPR_14	Tetratricopeptide repeat	0.07	3	23.50	179	197
PPR_long	Pentacotripeptide-repeat region of PRORP	0.41	-1	27.00	215	263
PPR	PPR repeat	0.00027	10	25.00	218	237
PPR_1	PPR repeat	0.0001	11	23.80	218	232
PPR_2	PPR repeat family	0.0044	6	30.00	218	232
PPR_1	PPR repeat	4.7E-09	25	23.80	247	277
PPR_2	PPR repeat family	1.3E-17	53	30.00	248	297
PPR_3	Pentatricopeptide repeat domain	4.1E-10	29	25.00	248	293
PPR	PPR repeat	1.9E-07	20	25.00	252	280
PPR_long	Pentacotripeptide-repeat region of PRORP	3.3E-08	22	27.00	267	319
PPR_3	Pentatricopeptide repeat domain	1.1E-12	37	25.00	272	330
PPR_1	PPR repeat	1.3E-15	46	23.80	280	312
PPR_2	PPR repeat family	2.5E-10	30	30.00	283	318
PPR	PPR repeat	1.2E-09	27	25.00	286	313
PPR_1	PPR repeat	4.8E-06	15	23.80	317	344
PPR_2	PPR repeat family	0.0026	7	30.00	321	344
PPR	PPR repeat	0.00013	11	25.00	323	345
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-06	16	27.00	349	439
PPR_2	PPR repeat family	6.1E-12	35	30.00	353	397
PPR_1	PPR repeat	6.4E-10	28	23.80	353	381
PPR_3	Pentatricopeptide repeat domain	3.8E-10	29	25.00	354	400
PPR	PPR repeat	3.1E-09	26	25.00	356	386
PPR_1	PPR repeat	0.03	3	23.80	384	395
PPR_2	PPR repeat family	1E-10	31	30.00	388	436
PPR	PPR repeat	0.00016	11	25.00	392	420
PPR_long	Pentacotripeptide-repeat region of PRORP	5.8E-06	15	27.00	403	482
PPR_1	PPR repeat	1.1E-07	21	23.80	420	452
PPR_3	Pentatricopeptide repeat domain	4.8E-08	22	25.00	422	468
PPR	PPR repeat	0.00011	12	25.00	427	456
PPR_2	PPR repeat family	6.9E-13	38	30.00	427	472
PPR_3	Pentatricopeptide repeat domain	7.4E-07	18	25.00	448	501
PPR_1	PPR repeat	1.1E-06	17	23.80	454	484
PPR_2	PPR repeat family	6.6E-07	19	30.00	462	504
PPR	PPR repeat	0.00031	10	25.00	464	490
TPR_14	Tetratricopeptide repeat	0.091	3	23.50	465	489
PPR	PPR repeat	0.37	1	25.00	497	517
NOG1_N	NOG1 N-terminal helical domain	3.8E-05	13	22.90	511	562