c2pfam

AT5G11320.1 :

Domain Description Evalue Bits GA Start End
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 7.8E-31 98 30.00 18 209
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.0064 6 21.00 18 46
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 1.2E-13 41 22.80 18 207
FAD_binding_3 FAD binding domain 6E-08 23 20.10 18 47
HI0933_like HI0933-like protein 0.00028 10 20.30 18 47
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.00029 12 22.00 18 50
DAO FAD dependent oxidoreductase 4.7E-05 13 24.70 18 46
Thi4 Thi4 family 2.5E-05 14 20.00 18 46
GIDA Glucose inhibited division protein A 0.0027 7 20.00 18 49
Lycopene_cycl Lycopene cyclase protein 0.0016 8 23.40 18 44
FAD_binding_2 FAD binding domain 0.00022 11 20.40 18 46
Shikimate_DH Shikimate / quinate 5-dehydrogenase 0.048 4 24.30 18 46
ApbA Ketopantoate reductase PanE/ApbA 0.017 5 21.70 19 55
FMO-like Flavin-binding monooxygenase-like 1.6E-29 93 19.60 19 329
NAD_binding_8 NAD(P)-binding Rossmann-like domain 8.5E-08 23 21.90 19 50
NAD_binding_9 FAD-NAD(P)-binding 0.00046 11 21.80 19 36
Amino_oxidase Flavin containing amine oxidoreductase 0.0053 6 19.80 25 48
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 1.3E-14 44 21.00 76 199
NAD_binding_9 FAD-NAD(P)-binding 0.12 3 21.80 83 143
HI0933_like HI0933-like protein 0.02 4 20.30 90 147
DAO FAD dependent oxidoreductase 0.031 4 24.70 98 165
Lycopene_cycl Lycopene cyclase protein 0.55 -1 23.40 108 167
Shikimate_DH Shikimate / quinate 5-dehydrogenase 0.016 6 24.30 169 200
Thi4 Thi4 family 0.015 5 20.00 171 209
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.00033 12 22.00 178 209
GIDA Glucose inhibited division protein A 0.055 3 20.00 178 201
HI0933_like HI0933-like protein 0.81 -2 20.30 178 191
FAD_binding_3 FAD binding domain 0.092 2 20.10 178 199
Lycopene_cycl Lycopene cyclase protein 0.14 1 23.40 179 205
ApbA Ketopantoate reductase PanE/ApbA 0.033 4 21.70 179 212
NAD_binding_9 FAD-NAD(P)-binding 0.22 2 21.80 181 199
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 0.00049 10 30.00 287 338
Amino_oxidase Flavin containing amine oxidoreductase 0.0066 6 19.80 287 323
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 6.1E-05 13 22.80 290 330
HI0933_like HI0933-like protein 0.017 4 20.30 290 326
SH3BGR SH3-binding, glutamic acid-rich protein 0.00021 12 21.00 294 349
GIDA Glucose inhibited division protein A 0.29 0 20.00 296 324
DAO FAD dependent oxidoreductase 0.39 0 24.70 296 327
NAD_binding_9 FAD-NAD(P)-binding 0.037 4 21.80 306 324
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.013 5 21.00 310 325

411

Pyr_redox_3
K_oxygenase
Pyr_redox_2
FAD_binding_3
HI0933_like
Pyr_redox
DAO
Thi4
GIDA
Lycopene_cycl
FAD_binding_2
Shikimate_DH
ApbA
FMO-like
NAD_binding_8
NAD_binding_9
Amino_oxidase
K_oxygenase
NAD_binding_9
HI0933_like
DAO
Lycopene_cycl
Shikimate_DH
Thi4
Pyr_redox
GIDA
HI0933_like
FAD_binding_3
Lycopene_cycl
ApbA
NAD_binding_9
Pyr_redox_3
Amino_oxidase
Pyr_redox_2
HI0933_like
SH3BGR
GIDA
DAO
NAD_binding_9
K_oxygenase

References:

Shikimate_DH
7556173 The molecular biology of multidomain proteins. Selected examples. Eur J Biochem 1995;232:7-18.

Amino_oxidase
9598979 Maize polyamine oxidase: primary structure from protein and cDNA sequencing. FEBS Lett 1998;426:62-66.
9162023 A key amino acid responsible for substrate selectivity of monoamine oxidase A and B. J Biol Chem 1997;272:14033-14036.
7770050 Cloning, sequencing and heterologous expression of the monoamine oxidase gene from Aspergillus niger. Mol Gen Genet 1995;247:430-438.

FAD_binding_2
8061609 Structure of glutathione reductase from Escherichia coli at 1.86 A resolution: comparison with the enzyme from human erythrocytes. Protein Sci 1994;3:799-809.

Lycopene_cycl
8837512 Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 1996;8:1613-1626.
11226339 One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases. Proc Natl Acad Sci U S A 2001;98:2905-2910.

ApbA
9488683 ApbA, the ketopantoate reductase enzyme of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway. J Biol Chem 1998;273:5572-5576.
9721324 The panE gene, encoding ketopantoate reductase, maps at 10 minutes and is allelic to apbA in Salmonella typhimurium. J Bacteriol 1998;180:4757-4759.

Thi4
7961415 Cloning, nucleotide sequence, and regulation of Schizosaccharomyces pombe thi4, a thiamine biosynthetic gene. J Bacteriol 1994;176:6631-6635.

SH3BGR
9050928 Cloning a new human gene from chromosome 21q22.3 encoding a glutamic acid-rich protein expressed in heart and skeletal muscle. Hum Genet 1997;99:387-392.

FAD_binding_3
1409567 Crystal structure of the reduced form of p-hydroxybenzoate hydroxylase refined at 2.3A resolution. Proteins 1992;14:178-190.

Pyr_redox_2
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

DAO
9153426 Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry 1997;36:5853-5860.

HI0933_like

Pyr_redox
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

GIDA

Pyr_redox_3

K_oxygenase

NAD_binding_9

NAD_binding_8

FMO-like
9538688 A hydrophobic sequence motif common to N-hydroxylating enzymes. Trends Biochem Sci 1998;23:56-57.

Domain	Description	Evalue	Bits	GA	Start	End
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	7.8E-31	98	30.00	18	209
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	0.0064	6	21.00	18	46
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	1.2E-13	41	22.80	18	207
FAD_binding_3	FAD binding domain	6E-08	23	20.10	18	47
HI0933_like	HI0933-like protein	0.00028	10	20.30	18	47
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	0.00029	12	22.00	18	50
DAO	FAD dependent oxidoreductase	4.7E-05	13	24.70	18	46
Thi4	Thi4 family	2.5E-05	14	20.00	18	46
GIDA	Glucose inhibited division protein A	0.0027	7	20.00	18	49
Lycopene_cycl	Lycopene cyclase protein	0.0016	8	23.40	18	44
FAD_binding_2	FAD binding domain	0.00022	11	20.40	18	46
Shikimate_DH	Shikimate / quinate 5-dehydrogenase	0.048	4	24.30	18	46
ApbA	Ketopantoate reductase PanE/ApbA	0.017	5	21.70	19	55
FMO-like	Flavin-binding monooxygenase-like	1.6E-29	93	19.60	19	329
NAD_binding_8	NAD(P)-binding Rossmann-like domain	8.5E-08	23	21.90	19	50
NAD_binding_9	FAD-NAD(P)-binding	0.00046	11	21.80	19	36
Amino_oxidase	Flavin containing amine oxidoreductase	0.0053	6	19.80	25	48
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	1.3E-14	44	21.00	76	199
NAD_binding_9	FAD-NAD(P)-binding	0.12	3	21.80	83	143
HI0933_like	HI0933-like protein	0.02	4	20.30	90	147
DAO	FAD dependent oxidoreductase	0.031	4	24.70	98	165
Lycopene_cycl	Lycopene cyclase protein	0.55	-1	23.40	108	167
Shikimate_DH	Shikimate / quinate 5-dehydrogenase	0.016	6	24.30	169	200
Thi4	Thi4 family	0.015	5	20.00	171	209
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	0.00033	12	22.00	178	209
GIDA	Glucose inhibited division protein A	0.055	3	20.00	178	201
HI0933_like	HI0933-like protein	0.81	-2	20.30	178	191
FAD_binding_3	FAD binding domain	0.092	2	20.10	178	199
Lycopene_cycl	Lycopene cyclase protein	0.14	1	23.40	179	205
ApbA	Ketopantoate reductase PanE/ApbA	0.033	4	21.70	179	212
NAD_binding_9	FAD-NAD(P)-binding	0.22	2	21.80	181	199
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	0.00049	10	30.00	287	338
Amino_oxidase	Flavin containing amine oxidoreductase	0.0066	6	19.80	287	323
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	6.1E-05	13	22.80	290	330
HI0933_like	HI0933-like protein	0.017	4	20.30	290	326
SH3BGR	SH3-binding, glutamic acid-rich protein	0.00021	12	21.00	294	349
GIDA	Glucose inhibited division protein A	0.29	0	20.00	296	324
DAO	FAD dependent oxidoreductase	0.39	0	24.70	296	327
NAD_binding_9	FAD-NAD(P)-binding	0.037	4	21.80	306	324
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	0.013	5	21.00	310	325