c2pfam

AT5G11620.1 :

Domain Description Evalue Bits GA Start End
SWIM SWIM zinc finger 2.6E-10 29 19.60 59 87
zf-RING_2 Ring finger domain 0.62 0 27.30 71 83
PHD_4 PHD-finger 0.079 3 30.60 151 170
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.0095 6 27.50 157 170
GAGA GAGA factor 2.6E-05 13 20.20 159 169
C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain) 1.3E-07 21 26.00 161 207
zf-RING_2 Ring finger domain 2.6E-05 14 27.30 164 225
PHD_4 PHD-finger 7.7E-05 12 30.60 164 208
PHD PHD-finger 8.6E-05 12 27.90 186 225
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.017 5 27.50 189 205
Zf_RING KIAA1045 RING finger 0.00022 11 30.80 190 214
RINGv RING-variant domain 0.00017 11 21.60 194 224
GAGA GAGA factor 0.0043 6 20.20 204 226
C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain) 0.15 1 26.00 210 226
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.11 2 27.50 216 230
PHD_4 PHD-finger 0.53 0 30.60 219 227
Zf_RING KIAA1045 RING finger 0.24 1 30.80 220 261
PHD PHD-finger 0.66 -1 27.90 220 226
C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain) 0.35 0 26.00 244 255

273

SWIM
zf-RING_2
PHD_4
zf-Di19
GAGA
C1_1
zf-RING_2
PHD_4
PHD
zf-Di19
Zf_RING
RINGv
GAGA
C1_1
zf-Di19
PHD_4
Zf_RING
PHD
C1_1

References:

C1_1
1862342 Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science. 1991;253:407-414.

zf-Di19

RINGv

GAGA
9033593 The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode. Nat Struct Biol. 1997;4:122-132.

SWIM
12151216 SWIM, a novel Zn-chelating domain present in bacteria, archaea and eukaryotes. Trends Biochem Sci 2002;27:384-386.

zf-RING_2

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Zf_RING

PHD_4

Domain	Description	Evalue	Bits	GA	Start	End
SWIM	SWIM zinc finger	2.6E-10	29	19.60	59	87
zf-RING_2	Ring finger domain	0.62	0	27.30	71	83
PHD_4	PHD-finger	0.079	3	30.60	151	170
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.0095	6	27.50	157	170
GAGA	GAGA factor	2.6E-05	13	20.20	159	169
C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	1.3E-07	21	26.00	161	207
zf-RING_2	Ring finger domain	2.6E-05	14	27.30	164	225
PHD_4	PHD-finger	7.7E-05	12	30.60	164	208
PHD	PHD-finger	8.6E-05	12	27.90	186	225
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.017	5	27.50	189	205
Zf_RING	KIAA1045 RING finger	0.00022	11	30.80	190	214
RINGv	RING-variant domain	0.00017	11	21.60	194	224
GAGA	GAGA factor	0.0043	6	20.20	204	226
C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	0.15	1	26.00	210	226
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.11	2	27.50	216	230
PHD_4	PHD-finger	0.53	0	30.60	219	227
Zf_RING	KIAA1045 RING finger	0.24	1	30.80	220	261
PHD	PHD-finger	0.66	-1	27.90	220	226
C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	0.35	0	26.00	244	255