c2pfam

AT5G12100.1 :

Domain Description Evalue Bits GA Start End
TPR_19 Tetratricopeptide repeat 0.0041 7 25.00 62 85
PPR_2 PPR repeat family 0.00035 10 30.00 114 156
PPR PPR repeat 0.79 0 25.00 122 140
ATP13 Mitochondrial ATPase expression 0.75 -1 26.70 137 167
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.012 4 25.90 139 168
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 170 222
PPR PPR repeat 0.00087 9 25.00 182 209
PPR_2 PPR repeat family 1.8E-09 27 30.00 182 226
PPR_long Pentacotripeptide-repeat region of PRORP 6.5E-15 45 27.00 190 313
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.25 0 25.90 210 243
PPR_1 PPR repeat 1.2E-13 40 23.80 210 240
PPR_2 PPR repeat family 1.4E-19 60 30.00 212 261
PPR PPR repeat 2.7E-10 30 25.00 216 243
PPR_3 Pentatricopeptide repeat domain 5.6E-16 48 25.00 236 292
PPR_1 PPR repeat 5.4E-14 41 23.80 245 276
PPR_2 PPR repeat family 2.4E-17 53 30.00 247 296
PPR PPR repeat 8E-12 35 25.00 250 278
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.81 -2 25.90 251 274
RPN7 26S proteasome subunit RPN7 0.83 -1 25.30 252 271
PPR_1 PPR repeat 5.8E-13 38 23.80 279 311
PPR_2 PPR repeat family 8.3E-18 54 30.00 282 330
MRP-S27 Mitochondrial 28S ribosomal protein S27 8.7E-06 14 25.90 285 344
PPR_3 Pentatricopeptide repeat domain 3.4E-07 20 25.00 285 327
PPR PPR repeat 8.6E-11 31 25.00 285 315
TPR_19 Tetratricopeptide repeat 0.26 2 25.00 294 309
Mtf2 Mtf2 family 0.037 3 27.00 304 325
PPR_1 PPR repeat 0.00033 10 23.80 314 339
PPR PPR repeat 0.00011 12 25.00 320 349
PPR_2 PPR repeat family 1.1E-09 28 30.00 327 366
PPR_long Pentacotripeptide-repeat region of PRORP 2.5E-14 43 27.00 330 465
TPR_19 Tetratricopeptide repeat 0.012 6 25.00 334 378
PPR_3 Pentatricopeptide repeat domain 1.3E-09 28 25.00 343 398
PPR_1 PPR repeat 1.2E-08 24 23.80 349 377
PPR PPR repeat 5.4E-07 19 25.00 355 378
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.092 1 25.90 365 408
PPR_1 PPR repeat 1.3E-12 37 23.80 383 408
PPR_2 PPR repeat family 2.9E-11 33 30.00 387 427
PPR PPR repeat 8.6E-09 25 25.00 390 419
PPR_3 Pentatricopeptide repeat domain 2.1E-13 40 25.00 413 470
PPR_1 PPR repeat 2.9E-09 26 23.80 419 451
PPR_2 PPR repeat family 2.1E-15 46 30.00 422 469
PPR PPR repeat 2.3E-05 14 25.00 426 455
RPN7 26S proteasome subunit RPN7 0.081 2 25.30 426 456
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-12 35 27.00 443 544
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.24 0 21.90 447 472
PPR_1 PPR repeat 7.3E-09 25 23.80 453 486
PPR_2 PPR repeat family 2.5E-16 49 30.00 457 506
Mtf2 Mtf2 family 0.048 3 27.00 458 493
PPR PPR repeat 1.5E-09 27 25.00 461 489
PPR_3 Pentatricopeptide repeat domain 4.4E-05 13 25.00 479 503
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0091 5 21.90 479 504
PPR_1 PPR repeat 2E-09 27 23.80 489 521
PPR_2 PPR repeat family 1.4E-08 25 30.00 492 527
PPR PPR repeat 1.6E-06 18 25.00 495 525
PPR_3 Pentatricopeptide repeat domain 5.8E-13 38 25.00 516 572
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.14 1 21.90 518 537
PPR_1 PPR repeat 1.2E-12 37 23.80 523 555
PPR_2 PPR repeat family 1.4E-18 57 30.00 527 574
PPR PPR repeat 3.3E-09 26 25.00 531 560
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.45 -1 25.90 538 583
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-11 33 27.00 543 650
PPR_1 PPR repeat 3.1E-10 29 23.80 558 587
PPR_2 PPR repeat family 1.1E-16 51 30.00 563 609
PPR PPR repeat 8.6E-10 28 25.00 565 595
TPR_19 Tetratricopeptide repeat 0.25 2 25.00 569 593
PPR_3 Pentatricopeptide repeat domain 8.8E-17 51 25.00 586 646
PPR_1 PPR repeat 1.4E-12 37 23.80 593 626
PPR_2 PPR repeat family 7.8E-17 51 30.00 597 644
PPR PPR repeat 1.3E-11 34 25.00 600 630
Mtf2 Mtf2 family 0.099 2 27.00 613 642
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.066 2 21.90 616 648
PPR_1 PPR repeat 0.037 4 23.80 629 659
PPR PPR repeat 0.37 1 25.00 636 648
ATP13 Mitochondrial ATPase expression 0.005 6 26.70 652 704
PPR_long Pentacotripeptide-repeat region of PRORP 8.6E-09 25 27.00 658 741
PPR_1 PPR repeat 1.3E-05 15 23.80 660 691
PPR_3 Pentatricopeptide repeat domain 8.7E-07 19 25.00 661 707
PPR_2 PPR repeat family 2.1E-10 30 30.00 663 707
PPR PPR repeat 1.6E-07 21 25.00 667 695
RPN7 26S proteasome subunit RPN7 0.022 4 25.30 673 699
PPR_3 Pentatricopeptide repeat domain 7.6E-07 19 25.00 695 743
PPR_1 PPR repeat 0.052 3 23.80 699 707
PPR_2 PPR repeat family 2E-11 34 30.00 701 746
PPR PPR repeat 0.0011 9 25.00 702 727
Mtf2 Mtf2 family 0.0055 6 27.00 713 760
PPR_long Pentacotripeptide-repeat region of PRORP 0.018 4 27.00 720 765
PPR_1 PPR repeat 9.1E-06 15 23.80 730 761
PPR_2 PPR repeat family 4.9E-08 23 30.00 737 769
PPR PPR repeat 6.1E-07 19 25.00 737 766
PPR_3 Pentatricopeptide repeat domain 0.078 3 25.00 759 796
PPR_2 PPR repeat family 0.086 3 30.00 769 797
PPR PPR repeat 0.36 1 25.00 776 797

816

TPR_19
PPR_2
PPR
ATP13
MRP-S27
PPR_3
PPR
PPR_2
PPR_long
MRP-S27
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
RPN7
PPR_1
PPR_2
MRP-S27
PPR_3
PPR
TPR_19
Mtf2
PPR_1
PPR
PPR_2
PPR_long
TPR_19
PPR_3
PPR_1
PPR
MRP-S27
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
RPN7
PPR_long
ECSIT
PPR_1
PPR_2
Mtf2
PPR
PPR_3
ECSIT
PPR_1
PPR_2
PPR
PPR_3
ECSIT
PPR_1
PPR_2
PPR
MRP-S27
PPR_long
PPR_1
PPR_2
PPR
TPR_19
PPR_3
PPR_1
PPR_2
PPR
Mtf2
ECSIT
PPR_1
PPR
ATP13
PPR_long
PPR_1
PPR_3
PPR_2
PPR
RPN7
PPR_3
PPR_1
PPR_2
PPR
Mtf2
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR

References:

Mtf2

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

TPR_19

ATP13

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_19	Tetratricopeptide repeat	0.0041	7	25.00	62	85
PPR_2	PPR repeat family	0.00035	10	30.00	114	156
PPR	PPR repeat	0.79	0	25.00	122	140
ATP13	Mitochondrial ATPase expression	0.75	-1	26.70	137	167
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.012	4	25.90	139	168
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	170	222
PPR	PPR repeat	0.00087	9	25.00	182	209
PPR_2	PPR repeat family	1.8E-09	27	30.00	182	226
PPR_long	Pentacotripeptide-repeat region of PRORP	6.5E-15	45	27.00	190	313
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.25	0	25.90	210	243
PPR_1	PPR repeat	1.2E-13	40	23.80	210	240
PPR_2	PPR repeat family	1.4E-19	60	30.00	212	261
PPR	PPR repeat	2.7E-10	30	25.00	216	243
PPR_3	Pentatricopeptide repeat domain	5.6E-16	48	25.00	236	292
PPR_1	PPR repeat	5.4E-14	41	23.80	245	276
PPR_2	PPR repeat family	2.4E-17	53	30.00	247	296
PPR	PPR repeat	8E-12	35	25.00	250	278
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.81	-2	25.90	251	274
RPN7	26S proteasome subunit RPN7	0.83	-1	25.30	252	271
PPR_1	PPR repeat	5.8E-13	38	23.80	279	311
PPR_2	PPR repeat family	8.3E-18	54	30.00	282	330
MRP-S27	Mitochondrial 28S ribosomal protein S27	8.7E-06	14	25.90	285	344
PPR_3	Pentatricopeptide repeat domain	3.4E-07	20	25.00	285	327
PPR	PPR repeat	8.6E-11	31	25.00	285	315
TPR_19	Tetratricopeptide repeat	0.26	2	25.00	294	309
Mtf2	Mtf2 family	0.037	3	27.00	304	325
PPR_1	PPR repeat	0.00033	10	23.80	314	339
PPR	PPR repeat	0.00011	12	25.00	320	349
PPR_2	PPR repeat family	1.1E-09	28	30.00	327	366
PPR_long	Pentacotripeptide-repeat region of PRORP	2.5E-14	43	27.00	330	465
TPR_19	Tetratricopeptide repeat	0.012	6	25.00	334	378
PPR_3	Pentatricopeptide repeat domain	1.3E-09	28	25.00	343	398
PPR_1	PPR repeat	1.2E-08	24	23.80	349	377
PPR	PPR repeat	5.4E-07	19	25.00	355	378
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.092	1	25.90	365	408
PPR_1	PPR repeat	1.3E-12	37	23.80	383	408
PPR_2	PPR repeat family	2.9E-11	33	30.00	387	427
PPR	PPR repeat	8.6E-09	25	25.00	390	419
PPR_3	Pentatricopeptide repeat domain	2.1E-13	40	25.00	413	470
PPR_1	PPR repeat	2.9E-09	26	23.80	419	451
PPR_2	PPR repeat family	2.1E-15	46	30.00	422	469
PPR	PPR repeat	2.3E-05	14	25.00	426	455
RPN7	26S proteasome subunit RPN7	0.081	2	25.30	426	456
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-12	35	27.00	443	544
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.24	0	21.90	447	472
PPR_1	PPR repeat	7.3E-09	25	23.80	453	486
PPR_2	PPR repeat family	2.5E-16	49	30.00	457	506
Mtf2	Mtf2 family	0.048	3	27.00	458	493
PPR	PPR repeat	1.5E-09	27	25.00	461	489
PPR_3	Pentatricopeptide repeat domain	4.4E-05	13	25.00	479	503
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0091	5	21.90	479	504
PPR_1	PPR repeat	2E-09	27	23.80	489	521
PPR_2	PPR repeat family	1.4E-08	25	30.00	492	527
PPR	PPR repeat	1.6E-06	18	25.00	495	525
PPR_3	Pentatricopeptide repeat domain	5.8E-13	38	25.00	516	572
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.14	1	21.90	518	537
PPR_1	PPR repeat	1.2E-12	37	23.80	523	555
PPR_2	PPR repeat family	1.4E-18	57	30.00	527	574
PPR	PPR repeat	3.3E-09	26	25.00	531	560
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.45	-1	25.90	538	583
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-11	33	27.00	543	650
PPR_1	PPR repeat	3.1E-10	29	23.80	558	587
PPR_2	PPR repeat family	1.1E-16	51	30.00	563	609
PPR	PPR repeat	8.6E-10	28	25.00	565	595
TPR_19	Tetratricopeptide repeat	0.25	2	25.00	569	593
PPR_3	Pentatricopeptide repeat domain	8.8E-17	51	25.00	586	646
PPR_1	PPR repeat	1.4E-12	37	23.80	593	626
PPR_2	PPR repeat family	7.8E-17	51	30.00	597	644
PPR	PPR repeat	1.3E-11	34	25.00	600	630
Mtf2	Mtf2 family	0.099	2	27.00	613	642
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.066	2	21.90	616	648
PPR_1	PPR repeat	0.037	4	23.80	629	659
PPR	PPR repeat	0.37	1	25.00	636	648
ATP13	Mitochondrial ATPase expression	0.005	6	26.70	652	704
PPR_long	Pentacotripeptide-repeat region of PRORP	8.6E-09	25	27.00	658	741
PPR_1	PPR repeat	1.3E-05	15	23.80	660	691
PPR_3	Pentatricopeptide repeat domain	8.7E-07	19	25.00	661	707
PPR_2	PPR repeat family	2.1E-10	30	30.00	663	707
PPR	PPR repeat	1.6E-07	21	25.00	667	695
RPN7	26S proteasome subunit RPN7	0.022	4	25.30	673	699
PPR_3	Pentatricopeptide repeat domain	7.6E-07	19	25.00	695	743
PPR_1	PPR repeat	0.052	3	23.80	699	707
PPR_2	PPR repeat family	2E-11	34	30.00	701	746
PPR	PPR repeat	0.0011	9	25.00	702	727
Mtf2	Mtf2 family	0.0055	6	27.00	713	760
PPR_long	Pentacotripeptide-repeat region of PRORP	0.018	4	27.00	720	765
PPR_1	PPR repeat	9.1E-06	15	23.80	730	761
PPR_2	PPR repeat family	4.9E-08	23	30.00	737	769
PPR	PPR repeat	6.1E-07	19	25.00	737	766
PPR_3	Pentatricopeptide repeat domain	0.078	3	25.00	759	796
PPR_2	PPR repeat family	0.086	3	30.00	769	797
PPR	PPR repeat	0.36	1	25.00	776	797