c2pfam

AT1G03160.1 :

Domain Description Evalue Bits GA Start End
TMP-TENI Thiamine monophosphate synthase/TENI 4E-08 23 20.80 94 174
AAA_15 AAA ATPase domain 0.97 -1 32.10 280 318
IIGP Interferon-inducible GTPase (IIGP) 0.00065 9 19.60 323 371
AAA_15 AAA ATPase domain 0.00016 11 32.10 347 369
RsgA_GTPase RsgA GTPase 0.0013 9 30.00 348 379
Septin Septin 0.00022 10 20.00 350 429
AAA_29 P-loop containing region of AAA domain 0.00028 11 27.00 351 369
ABC_tran ABC transporter 0.0001 13 23.10 351 381
GTP_EFTU Elongation factor Tu GTP binding domain 5E-13 39 20.20 352 528
cobW CobW/HypB/UreG, nucleotide-binding domain 0.019 4 20.70 352 373
AIG1 AIG1 family 3.7E-05 13 20.30 352 469
FeoB_N Ferrous iron transport protein B 0.00045 10 21.20 352 373
MMR_HSR1 GTPase of unknown function 5.7E-16 49 24.50 352 485
Dynamin_N Dynamin family 2.5E-13 40 21.00 353 399
Dynamin_N Dynamin family 4.7E-13 39 21.00 409 485
IIGP Interferon-inducible GTPase (IIGP) 0.091 2 19.60 417 491
FeoB_N Ferrous iron transport protein B 0.0073 6 21.20 420 492
RsgA_GTPase RsgA GTPase 0.0003 11 30.00 433 506
cobW CobW/HypB/UreG, nucleotide-binding domain 0.00085 9 20.70 447 504
AAA_15 AAA ATPase domain 1 -1 32.10 503 515
MMR_HSR1 GTPase of unknown function 0.84 0 24.50 614 655
FlgT_M Flagellar assembly protein T, middle domain 4.7E-05 14 31.20 821 907

912

TMP-TENI
AAA_15
IIGP
AAA_15
RsgA_GTPase
Septin
AAA_29
ABC_tran
GTP_EFTU
cobW
AIG1
FeoB_N
MMR_HSR1
Dynamin_N
Dynamin_N
IIGP
FeoB_N
RsgA_GTPase
cobW
AAA_15
MMR_HSR1
FlgT_M

References:

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

RsgA_GTPase

AAA_15

FlgT_M

AAA_29

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AIG1
8742710 Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 1996;8:241-249.

IIGP
11907101 The IFN-inducible Golgi- and endoplasmic reticulum- associated 47-kDa GTPase IIGP is transiently expressed during listeriosis. J Immunol 2002;168:3428-3436.

TMP-TENI
9139923 Characterization of the Bacillus subtilis thiC operon involved in thiamine biosynthesis. J Bacteriol 1997;179:3030-3035.

Domain	Description	Evalue	Bits	GA	Start	End
TMP-TENI	Thiamine monophosphate synthase/TENI	4E-08	23	20.80	94	174
AAA_15	AAA ATPase domain	0.97	-1	32.10	280	318
IIGP	Interferon-inducible GTPase (IIGP)	0.00065	9	19.60	323	371
AAA_15	AAA ATPase domain	0.00016	11	32.10	347	369
RsgA_GTPase	RsgA GTPase	0.0013	9	30.00	348	379
Septin	Septin	0.00022	10	20.00	350	429
AAA_29	P-loop containing region of AAA domain	0.00028	11	27.00	351	369
ABC_tran	ABC transporter	0.0001	13	23.10	351	381
GTP_EFTU	Elongation factor Tu GTP binding domain	5E-13	39	20.20	352	528
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.019	4	20.70	352	373
AIG1	AIG1 family	3.7E-05	13	20.30	352	469
FeoB_N	Ferrous iron transport protein B	0.00045	10	21.20	352	373
MMR_HSR1	GTPase of unknown function	5.7E-16	49	24.50	352	485
Dynamin_N	Dynamin family	2.5E-13	40	21.00	353	399
Dynamin_N	Dynamin family	4.7E-13	39	21.00	409	485
IIGP	Interferon-inducible GTPase (IIGP)	0.091	2	19.60	417	491
FeoB_N	Ferrous iron transport protein B	0.0073	6	21.20	420	492
RsgA_GTPase	RsgA GTPase	0.0003	11	30.00	433	506
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.00085	9	20.70	447	504
AAA_15	AAA ATPase domain	1	-1	32.10	503	515
MMR_HSR1	GTPase of unknown function	0.84	0	24.50	614	655
FlgT_M	Flagellar assembly protein T, middle domain	4.7E-05	14	31.20	821	907