c2pfam

AT5G13010.1 :

Domain Description Evalue Bits GA Start End
T2SSE Type II/IV secretion system protein 1.3E-05 15 24.90 563 596
DEAD DEAD/DEAH box helicase 6.8E-10 29 20.60 564 717
ATPase KaiC 0.00015 11 26.60 565 597
ABC_tran ABC transporter 0.00025 12 23.10 571 592
AAA_19 AAA domain 3.2E-06 18 25.10 572 700
AAA_22 AAA domain 1.2E-07 22 27.00 573 708
AAA_30 AAA domain 1.1E-06 19 27.00 573 681
AAA_23 AAA domain 0.0024 9 27.00 573 589
AAA_14 AAA domain 0.0007 10 27.00 574 711
AAA_24 AAA domain 1.3E-05 15 27.00 574 680
SRP54 SRP54-type protein, GTPase domain 0.00034 11 20.50 575 628
DUF2075 Uncharacterized conserved protein (DUF2075) 1.8E-09 27 20.30 575 681
Flavi_DEAD Flavivirus DEAD domain 1E-05 16 20.70 576 711
cobW CobW/HypB/UreG, nucleotide-binding domain 0.00042 10 20.70 576 606
AAA_33 AAA domain 6.7E-05 13 27.00 576 638
Helicase_C Helicase conserved C-terminal domain 1.2E-14 45 20.90 763 892
HA2 Helicase associated domain (HA2) 2.2E-24 76 21.30 956 1041
OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 4.9E-18 56 29.50 1100 1177
AAA_23 AAA domain 0.0042 8 27.00 1189 1235

1255

T2SSE
DEAD
ATPase
ABC_tran
AAA_19
AAA_22
AAA_30
AAA_23
AAA_14
AAA_24
SRP54
DUF2075
Flavi_DEAD
cobW
AAA_33
Helicase_C
HA2
OB_NTP_bind
AAA_23

References:

Flavi_DEAD

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DUF2075

T2SSE

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

Helicase_C

HA2

AAA_33

ATPase

AAA_30

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

OB_NTP_bind

AAA_24

AAA_23

AAA_22

AAA_19

Domain	Description	Evalue	Bits	GA	Start	End
T2SSE	Type II/IV secretion system protein	1.3E-05	15	24.90	563	596
DEAD	DEAD/DEAH box helicase	6.8E-10	29	20.60	564	717
ATPase	KaiC	0.00015	11	26.60	565	597
ABC_tran	ABC transporter	0.00025	12	23.10	571	592
AAA_19	AAA domain	3.2E-06	18	25.10	572	700
AAA_22	AAA domain	1.2E-07	22	27.00	573	708
AAA_30	AAA domain	1.1E-06	19	27.00	573	681
AAA_23	AAA domain	0.0024	9	27.00	573	589
AAA_14	AAA domain	0.0007	10	27.00	574	711
AAA_24	AAA domain	1.3E-05	15	27.00	574	680
SRP54	SRP54-type protein, GTPase domain	0.00034	11	20.50	575	628
DUF2075	Uncharacterized conserved protein (DUF2075)	1.8E-09	27	20.30	575	681
Flavi_DEAD	Flavivirus DEAD domain	1E-05	16	20.70	576	711
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.00042	10	20.70	576	606
AAA_33	AAA domain	6.7E-05	13	27.00	576	638
Helicase_C	Helicase conserved C-terminal domain	1.2E-14	45	20.90	763	892
HA2	Helicase associated domain (HA2)	2.2E-24	76	21.30	956	1041
OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	4.9E-18	56	29.50	1100	1177
AAA_23	AAA domain	0.0042	8	27.00	1189	1235