c2pfam

AT5G13270.1 :

Domain Description Evalue Bits GA Start End
DUF4071 Domain of unknown function (DUF4071) 8E-05 11 24.10 22 156
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-06 17 27.00 54 193
PPR PPR repeat 7.1E-05 13 25.00 57 79
PPR_2 PPR repeat family 1.4E-09 28 30.00 58 93
PPR_1 PPR repeat 0.0017 8 23.80 60 74
PPR_3 Pentatricopeptide repeat domain 0.0089 6 25.00 62 93
PPR_3 Pentatricopeptide repeat domain 0.0012 9 25.00 71 128
PPR_3 Pentatricopeptide repeat domain 0.047 3 25.00 103 146
PPR_2 PPR repeat family 5.2E-07 19 30.00 117 146
PPR PPR repeat 3.1E-06 17 25.00 122 147
PPR_1 PPR repeat 0.00013 11 23.80 122 145
TPR_19 Tetratricopeptide repeat 0.37 1 25.00 135 177
PPR_3 Pentatricopeptide repeat domain 0.012 5 25.00 146 195
PPR_2 PPR repeat family 5.8E-08 22 30.00 148 195
PPR PPR repeat 1.2E-06 18 25.00 151 179
PPR_1 PPR repeat 0.00022 10 23.80 153 175
PPR_1 PPR repeat 0.0062 6 23.80 225 245
PPR PPR repeat 0.00026 11 25.00 225 246
PPR_2 PPR repeat family 0.22 1 30.00 225 246
PPR_2 PPR repeat family 6.8E-09 25 30.00 251 296
PPR PPR repeat 2.1E-05 14 25.00 251 281
PPR_3 Pentatricopeptide repeat domain 0.009 6 25.00 251 295
PPR_1 PPR repeat 0.031 4 23.80 259 274
PPR_long Pentacotripeptide-repeat region of PRORP 0.00045 9 27.00 263 372
RPN7 26S proteasome subunit RPN7 0.0036 6 25.30 325 359
PPR PPR repeat 0.47 1 25.00 326 348
PPR_1 PPR repeat 1.4E-07 21 23.80 348 375
PPR_3 Pentatricopeptide repeat domain 0.29 1 25.00 349 381
PPR_2 PPR repeat family 2E-12 37 30.00 349 397
PPR PPR repeat 4.7E-09 26 25.00 352 380
ATP13 Mitochondrial ATPase expression 0.00012 12 26.70 355 402
RPN7 26S proteasome subunit RPN7 0.11 2 25.30 359 383
TPR_19 Tetratricopeptide repeat 0.082 3 25.00 361 381
PPR PPR repeat 3.5E-06 17 25.00 426 448
PPR_2 PPR repeat family 0.002 8 30.00 427 449
PPR_3 Pentatricopeptide repeat domain 0.02 5 25.00 427 448
PPR_1 PPR repeat 0.00068 9 23.80 427 448
ATP13 Mitochondrial ATPase expression 0.9 -1 26.70 446 480
PPR_1 PPR repeat 1.9E-05 14 23.80 450 480
PPR_3 Pentatricopeptide repeat domain 7.1E-09 25 25.00 451 498
PPR_2 PPR repeat family 3.5E-14 42 30.00 451 499
PPR PPR repeat 3.2E-08 23 25.00 454 483
TPR_19 Tetratricopeptide repeat 0.3 1 25.00 467 516
PPR_long Pentacotripeptide-repeat region of PRORP 2.5E-07 20 27.00 468 550
PPR_3 Pentatricopeptide repeat domain 1.1E-08 25 25.00 474 534
PPR_1 PPR repeat 0.069 3 23.80 483 494
ATP13 Mitochondrial ATPase expression 0.015 5 26.70 484 520
PPR PPR repeat 0.0021 8 25.00 489 517
PPR_1 PPR repeat 4.7E-07 19 23.80 520 550
PPR_2 PPR repeat family 2.6E-06 17 30.00 525 566
PPR PPR repeat 3.4E-07 20 25.00 527 550
TPR_19 Tetratricopeptide repeat 0.6 0 25.00 531 549
RPN7 26S proteasome subunit RPN7 0.38 0 25.30 531 549
TPR_19 Tetratricopeptide repeat 0.036 4 25.00 581 614
PPR PPR repeat 0.00087 9 25.00 598 619
PPR_2 PPR repeat family 0.053 3 30.00 598 619
PPR_1 PPR repeat 0.6 -1 23.80 603 616
DYW_deaminase DYW family of nucleic acid deaminases 7.9E-29 90 31.60 627 742

752

DUF4071
PPR_long
PPR
PPR_2
PPR_1
PPR_3
PPR_3
PPR_3
PPR_2
PPR
PPR_1
TPR_19
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_3
PPR_1
PPR_long
RPN7
PPR
PPR_1
PPR_3
PPR_2
PPR
ATP13
RPN7
TPR_19
PPR
PPR_2
PPR_3
PPR_1
ATP13
PPR_1
PPR_3
PPR_2
PPR
TPR_19
PPR_long
PPR_3
PPR_1
ATP13
PPR
PPR_1
PPR_2
PPR
TPR_19
RPN7
TPR_19
PPR
PPR_2
PPR_1
DYW_deaminase

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

DUF4071

DYW_deaminase

ATP13

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
DUF4071	Domain of unknown function (DUF4071)	8E-05	11	24.10	22	156
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-06	17	27.00	54	193
PPR	PPR repeat	7.1E-05	13	25.00	57	79
PPR_2	PPR repeat family	1.4E-09	28	30.00	58	93
PPR_1	PPR repeat	0.0017	8	23.80	60	74
PPR_3	Pentatricopeptide repeat domain	0.0089	6	25.00	62	93
PPR_3	Pentatricopeptide repeat domain	0.0012	9	25.00	71	128
PPR_3	Pentatricopeptide repeat domain	0.047	3	25.00	103	146
PPR_2	PPR repeat family	5.2E-07	19	30.00	117	146
PPR	PPR repeat	3.1E-06	17	25.00	122	147
PPR_1	PPR repeat	0.00013	11	23.80	122	145
TPR_19	Tetratricopeptide repeat	0.37	1	25.00	135	177
PPR_3	Pentatricopeptide repeat domain	0.012	5	25.00	146	195
PPR_2	PPR repeat family	5.8E-08	22	30.00	148	195
PPR	PPR repeat	1.2E-06	18	25.00	151	179
PPR_1	PPR repeat	0.00022	10	23.80	153	175
PPR_1	PPR repeat	0.0062	6	23.80	225	245
PPR	PPR repeat	0.00026	11	25.00	225	246
PPR_2	PPR repeat family	0.22	1	30.00	225	246
PPR_2	PPR repeat family	6.8E-09	25	30.00	251	296
PPR	PPR repeat	2.1E-05	14	25.00	251	281
PPR_3	Pentatricopeptide repeat domain	0.009	6	25.00	251	295
PPR_1	PPR repeat	0.031	4	23.80	259	274
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00045	9	27.00	263	372
RPN7	26S proteasome subunit RPN7	0.0036	6	25.30	325	359
PPR	PPR repeat	0.47	1	25.00	326	348
PPR_1	PPR repeat	1.4E-07	21	23.80	348	375
PPR_3	Pentatricopeptide repeat domain	0.29	1	25.00	349	381
PPR_2	PPR repeat family	2E-12	37	30.00	349	397
PPR	PPR repeat	4.7E-09	26	25.00	352	380
ATP13	Mitochondrial ATPase expression	0.00012	12	26.70	355	402
RPN7	26S proteasome subunit RPN7	0.11	2	25.30	359	383
TPR_19	Tetratricopeptide repeat	0.082	3	25.00	361	381
PPR	PPR repeat	3.5E-06	17	25.00	426	448
PPR_2	PPR repeat family	0.002	8	30.00	427	449
PPR_3	Pentatricopeptide repeat domain	0.02	5	25.00	427	448
PPR_1	PPR repeat	0.00068	9	23.80	427	448
ATP13	Mitochondrial ATPase expression	0.9	-1	26.70	446	480
PPR_1	PPR repeat	1.9E-05	14	23.80	450	480
PPR_3	Pentatricopeptide repeat domain	7.1E-09	25	25.00	451	498
PPR_2	PPR repeat family	3.5E-14	42	30.00	451	499
PPR	PPR repeat	3.2E-08	23	25.00	454	483
TPR_19	Tetratricopeptide repeat	0.3	1	25.00	467	516
PPR_long	Pentacotripeptide-repeat region of PRORP	2.5E-07	20	27.00	468	550
PPR_3	Pentatricopeptide repeat domain	1.1E-08	25	25.00	474	534
PPR_1	PPR repeat	0.069	3	23.80	483	494
ATP13	Mitochondrial ATPase expression	0.015	5	26.70	484	520
PPR	PPR repeat	0.0021	8	25.00	489	517
PPR_1	PPR repeat	4.7E-07	19	23.80	520	550
PPR_2	PPR repeat family	2.6E-06	17	30.00	525	566
PPR	PPR repeat	3.4E-07	20	25.00	527	550
TPR_19	Tetratricopeptide repeat	0.6	0	25.00	531	549
RPN7	26S proteasome subunit RPN7	0.38	0	25.30	531	549
TPR_19	Tetratricopeptide repeat	0.036	4	25.00	581	614
PPR	PPR repeat	0.00087	9	25.00	598	619
PPR_2	PPR repeat family	0.053	3	30.00	598	619
PPR_1	PPR repeat	0.6	-1	23.80	603	616
DYW_deaminase	DYW family of nucleic acid deaminases	7.9E-29	90	31.60	627	742