c2pfam

AT5G13530.1 :

Domain Description Evalue Bits GA Start End
FYVE FYVE zinc finger 0.036 5 26.80 6 52
zf-rbx1 RING-H2 zinc finger domain 0.00028 12 31.00 9 56
zf-C3HC4_5 Zinc finger, C3HC4 type (RING finger) 0.039 5 27.00 9 47
zf-RING_4 RING/Ubox like zinc-binding domain 4.6E-05 14 27.00 10 57
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 7.5E-05 13 27.00 10 55
Prok-RING_4 Prokaryotic RING finger family 4 7.9E-05 13 27.00 10 57
zf-RING_11 RING-like zinc finger 0.00085 10 27.00 10 38
zf-RING_UBOX RING-type zinc-finger 3.4E-10 31 25.20 10 53
zf-RING_5 zinc-RING finger domain 1.2E-09 29 27.90 10 57
zf-RING_2 Ring finger domain 3.6E-09 28 27.30 10 56
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.4E-09 27 21.00 10 55
zf-C3HC4_4 zinc finger of C3HC4-type, RING 1.4E-07 22 30.00 24 55
Tmemb_55A Transmembrane protein 55A 6.6E-06 16 30.00 27 81
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 9.3E-30 95 23.10 145 424
Pkinase Protein kinase domain 1.3E-33 107 20.40 170 424
Ank_5 Ankyrin repeats (many copies) 0.46 2 27.00 486 515
Ank_2 Ankyrin repeats (3 copies) 6.3E-14 43 27.30 489 572
Ank_4 Ankyrin repeats (many copies) 1.4E-05 17 22.70 499 529
Ank_5 Ankyrin repeats (many copies) 1.3E-06 20 27.00 506 545
Ank Ankyrin repeat 1.4E-08 26 20.60 510 543
Ank_3 Ankyrin repeat 8.4E-07 20 22.30 510 538
Ank_4 Ankyrin repeats (many copies) 1.4E-06 20 22.70 525 565
Ank_5 Ankyrin repeats (many copies) 0.03 6 27.00 532 572
Ank_3 Ankyrin repeat 0.0047 9 22.30 544 572
Ank Ankyrin repeat 0.0072 8 20.60 544 571
Ank_5 Ankyrin repeats (many copies) 3.9E-07 21 27.00 564 618
Ank_4 Ankyrin repeats (many copies) 9E-10 30 22.70 582 631
Ank_3 Ankyrin repeat 0.5 2 22.30 582 608
Ank Ankyrin repeat 0.00096 11 20.60 585 611
Ank_2 Ankyrin repeats (3 copies) 4E-09 28 27.30 585 657
Ank_5 Ankyrin repeats (many copies) 2E-08 25 27.00 599 653
Ank_3 Ankyrin repeat 0.043 6 22.30 612 636
Ank Ankyrin repeat 0.076 5 20.60 613 633
Ank_4 Ankyrin repeats (many copies) 0.14 4 22.70 644 665
Ank Ankyrin repeat 0.00088 11 20.60 650 722
Ank_4 Ankyrin repeats (many copies) 1.7E-08 26 22.70 688 744
Ank_2 Ankyrin repeats (3 copies) 9.5E-17 52 27.30 704 789
Ank_5 Ankyrin repeats (many copies) 0.36 2 27.00 706 723
Ank_5 Ankyrin repeats (many copies) 4.4E-09 27 27.00 712 766
Ank Ankyrin repeat 8.5E-06 17 20.60 725 756
Ank_3 Ankyrin repeat 2.2E-07 22 22.30 725 754
Ank_4 Ankyrin repeats (many copies) 2.5E-09 28 22.70 726 770
Ank_4 Ankyrin repeats (many copies) 2.8E-10 31 22.70 762 800
Ank_5 Ankyrin repeats (many copies) 7.8E-08 23 27.00 762 799
Ank_3 Ankyrin repeat 0.015 7 22.30 762 787
Ank Ankyrin repeat 7.1E-05 14 20.60 762 790
SH3_15 Mind bomb SH3 repeat domain 3.8E-23 73 24.00 866 984
tRNA_anti-codon OB-fold nucleic acid binding domain 0.23 2 27.00 961 1002
NHase_beta Nitrile hydratase beta subunit 0.13 3 21.30 982 1023
SH3_15 Mind bomb SH3 repeat domain 2.3E-16 51 24.00 990 1110
BPL_C Biotin protein ligase C terminal domain 0.021 6 20.50 1080 1102
NPCBM_assoc NPCBM-associated, NEW3 domain of alpha-galactosidase 0.31 2 20.90 1100 1132
NHase_beta Nitrile hydratase beta subunit 0.26 2 21.30 1107 1145
tRNA_anti-codon OB-fold nucleic acid binding domain 0.02 6 27.00 1109 1134
DUF5666 Domain of unknown function (DUF5666) 0.048 5 27.00 1114 1128
SH3_15 Mind bomb SH3 repeat domain 1.3E-14 45 24.00 1116 1234
SH3_15 Mind bomb SH3 repeat domain 2.3E-19 60 24.00 1242 1363
NHase_beta Nitrile hydratase beta subunit 0.16 3 21.30 1355 1379
SH3_15 Mind bomb SH3 repeat domain 2.2E-23 73 24.00 1369 1490
BPL_C Biotin protein ligase C terminal domain 0.0095 7 20.50 1457 1479
tRNA_anti-codon OB-fold nucleic acid binding domain 0.048 5 27.00 1458 1512
DUF5666 Domain of unknown function (DUF5666) 0.0067 8 27.00 1461 1510
NPCBM_assoc NPCBM-associated, NEW3 domain of alpha-galactosidase 0.45 2 20.90 1469 1514
SH3_15 Mind bomb SH3 repeat domain 5.4E-20 62 24.00 1498 1617
BPL_C Biotin protein ligase C terminal domain 0.47 1 20.50 1588 1602

1625

FYVE
zf-rbx1
zf-C3HC4_5
zf-RING_4
zf-C3HC4_2
Prok-RING_4
zf-RING_11
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4
zf-C3HC4_4
Tmemb_55A
PK_Tyr_Ser-Thr
Pkinase
Ank_5
Ank_2
Ank_4
Ank_5
Ank
Ank_3
Ank_4
Ank_5
Ank_3
Ank
Ank_5
Ank_4
Ank_3
Ank
Ank_2
Ank_5
Ank_3
Ank
Ank_4
Ank
Ank_4
Ank_2
Ank_5
Ank_5
Ank
Ank_3
Ank_4
Ank_4
Ank_5
Ank_3
Ank
SH3_15
tRNA_anti-codon
NHase_beta
SH3_15
BPL_C
NPCBM_assoc
NHase_beta
tRNA_anti-codon
DUF5666
SH3_15
SH3_15
NHase_beta
SH3_15
BPL_C
tRNA_anti-codon
DUF5666
NPCBM_assoc
SH3_15
BPL_C

References:

Prok-RING_4

zf-C3HC4_5

zf-C3HC4_4

NHase_beta
9195885 Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold. Structure 1997;5:691-699.

SH3_15

DUF5666

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

Ank_3

zf-C3HC4_2

FYVE
8798641 Endosomal localization of the autoantigen EEA1 is mediated by a zinc-binding FYVE finger. J Biol Chem 1996;271:24048-24054.
9697764 FYVE fingers bind PtdIns(3)P. Nature 1998;394:432-433.
10564636 FYVE-finger proteins - effectors of an inositol lipid. J Cell Sci 1999;112:4175-4183.

tRNA_anti-codon

zf-RING_UBOX

zf-RING_5

zf-RING_4

zf-RING_2

zf-RING_11

zf-rbx1

Ank
9013872 NMR structural characterization of the CDK inhibitor p19INK4d. FEBS Lett 1997;401:127-132.
2141669 Hereditary spherocytosis associated with deletion of human erythrocyte ankyrin gene on chromosome 8. Nature 1990;345:736-739.

PK_Tyr_Ser-Thr

Tmemb_55A
16365287 The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases. Proc Natl Acad Sci U S A. 2005;102:18854-18859.

BPL_C

Ank_4

NPCBM_assoc
15285616 [Phylogenetic analysis of alpha-galactosidases of the GH27 family]. Mol Biol (Mosk). 2004;38:463-476.
16131397 GH97 is a new family of glycoside hydrolases, which is related to the alpha-galactosidase superfamily. BMC Genomics. 2005;6:112.

Ank_2

Ank_5

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Domain	Description	Evalue	Bits	GA	Start	End
FYVE	FYVE zinc finger	0.036	5	26.80	6	52
zf-rbx1	RING-H2 zinc finger domain	0.00028	12	31.00	9	56
zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	0.039	5	27.00	9	47
zf-RING_4	RING/Ubox like zinc-binding domain	4.6E-05	14	27.00	10	57
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	7.5E-05	13	27.00	10	55
Prok-RING_4	Prokaryotic RING finger family 4	7.9E-05	13	27.00	10	57
zf-RING_11	RING-like zinc finger	0.00085	10	27.00	10	38
zf-RING_UBOX	RING-type zinc-finger	3.4E-10	31	25.20	10	53
zf-RING_5	zinc-RING finger domain	1.2E-09	29	27.90	10	57
zf-RING_2	Ring finger domain	3.6E-09	28	27.30	10	56
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	3.4E-09	27	21.00	10	55
zf-C3HC4_4	zinc finger of C3HC4-type, RING	1.4E-07	22	30.00	24	55
Tmemb_55A	Transmembrane protein 55A	6.6E-06	16	30.00	27	81
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	9.3E-30	95	23.10	145	424
Pkinase	Protein kinase domain	1.3E-33	107	20.40	170	424
Ank_5	Ankyrin repeats (many copies)	0.46	2	27.00	486	515
Ank_2	Ankyrin repeats (3 copies)	6.3E-14	43	27.30	489	572
Ank_4	Ankyrin repeats (many copies)	1.4E-05	17	22.70	499	529
Ank_5	Ankyrin repeats (many copies)	1.3E-06	20	27.00	506	545
Ank	Ankyrin repeat	1.4E-08	26	20.60	510	543
Ank_3	Ankyrin repeat	8.4E-07	20	22.30	510	538
Ank_4	Ankyrin repeats (many copies)	1.4E-06	20	22.70	525	565
Ank_5	Ankyrin repeats (many copies)	0.03	6	27.00	532	572
Ank_3	Ankyrin repeat	0.0047	9	22.30	544	572
Ank	Ankyrin repeat	0.0072	8	20.60	544	571
Ank_5	Ankyrin repeats (many copies)	3.9E-07	21	27.00	564	618
Ank_4	Ankyrin repeats (many copies)	9E-10	30	22.70	582	631
Ank_3	Ankyrin repeat	0.5	2	22.30	582	608
Ank	Ankyrin repeat	0.00096	11	20.60	585	611
Ank_2	Ankyrin repeats (3 copies)	4E-09	28	27.30	585	657
Ank_5	Ankyrin repeats (many copies)	2E-08	25	27.00	599	653
Ank_3	Ankyrin repeat	0.043	6	22.30	612	636
Ank	Ankyrin repeat	0.076	5	20.60	613	633
Ank_4	Ankyrin repeats (many copies)	0.14	4	22.70	644	665
Ank	Ankyrin repeat	0.00088	11	20.60	650	722
Ank_4	Ankyrin repeats (many copies)	1.7E-08	26	22.70	688	744
Ank_2	Ankyrin repeats (3 copies)	9.5E-17	52	27.30	704	789
Ank_5	Ankyrin repeats (many copies)	0.36	2	27.00	706	723
Ank_5	Ankyrin repeats (many copies)	4.4E-09	27	27.00	712	766
Ank	Ankyrin repeat	8.5E-06	17	20.60	725	756
Ank_3	Ankyrin repeat	2.2E-07	22	22.30	725	754
Ank_4	Ankyrin repeats (many copies)	2.5E-09	28	22.70	726	770
Ank_4	Ankyrin repeats (many copies)	2.8E-10	31	22.70	762	800
Ank_5	Ankyrin repeats (many copies)	7.8E-08	23	27.00	762	799
Ank_3	Ankyrin repeat	0.015	7	22.30	762	787
Ank	Ankyrin repeat	7.1E-05	14	20.60	762	790
SH3_15	Mind bomb SH3 repeat domain	3.8E-23	73	24.00	866	984
tRNA_anti-codon	OB-fold nucleic acid binding domain	0.23	2	27.00	961	1002
NHase_beta	Nitrile hydratase beta subunit	0.13	3	21.30	982	1023
SH3_15	Mind bomb SH3 repeat domain	2.3E-16	51	24.00	990	1110
BPL_C	Biotin protein ligase C terminal domain	0.021	6	20.50	1080	1102
NPCBM_assoc	NPCBM-associated, NEW3 domain of alpha-galactosidase	0.31	2	20.90	1100	1132
NHase_beta	Nitrile hydratase beta subunit	0.26	2	21.30	1107	1145
tRNA_anti-codon	OB-fold nucleic acid binding domain	0.02	6	27.00	1109	1134
DUF5666	Domain of unknown function (DUF5666)	0.048	5	27.00	1114	1128
SH3_15	Mind bomb SH3 repeat domain	1.3E-14	45	24.00	1116	1234
SH3_15	Mind bomb SH3 repeat domain	2.3E-19	60	24.00	1242	1363
NHase_beta	Nitrile hydratase beta subunit	0.16	3	21.30	1355	1379
SH3_15	Mind bomb SH3 repeat domain	2.2E-23	73	24.00	1369	1490
BPL_C	Biotin protein ligase C terminal domain	0.0095	7	20.50	1457	1479
tRNA_anti-codon	OB-fold nucleic acid binding domain	0.048	5	27.00	1458	1512
DUF5666	Domain of unknown function (DUF5666)	0.0067	8	27.00	1461	1510
NPCBM_assoc	NPCBM-associated, NEW3 domain of alpha-galactosidase	0.45	2	20.90	1469	1514
SH3_15	Mind bomb SH3 repeat domain	5.4E-20	62	24.00	1498	1617
BPL_C	Biotin protein ligase C terminal domain	0.47	1	20.50	1588	1602