c2pfam

AT5G13580.1 :

Domain Description Evalue Bits GA Start End
CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop 0.023 5 26.60 31 83
RsgA_GTPase RsgA GTPase 6.1E-06 17 30.00 102 142
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 4E-05 13 23.10 103 145
ABC_tran ABC transporter 2.5E-26 83 23.10 109 261
AAA_16 AAA ATPase domain 2.3E-07 22 32.60 116 156
AAA_25 AAA domain 3E-05 14 27.00 117 158
AAA_22 AAA domain 4.9E-05 14 27.00 118 145
AAA_29 P-loop containing region of AAA domain 4.2E-08 24 27.00 119 140
SMC_N RecF/RecN/SMC N terminal domain 9.8E-05 12 40.00 120 291
NACHT NACHT domain 1.4E-05 16 20.40 122 151
DUF87 Domain of unknown function DUF87 2.8E-05 15 20.90 122 147
MMR_HSR1 GTPase of unknown function 1.2E-05 16 24.50 123 157
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00016 12 27.00 123 140
AAA_28 AAA domain 8.9E-05 13 27.00 123 142
AAA_23 AAA domain 0.00039 12 27.00 123 139
NTPase_1 NTPase 0.0096 6 23.90 123 146
RNA_helicase RNA helicase 9.1E-05 13 21.50 124 171
AAA_18 AAA domain 8.7E-05 14 29.40 124 166
CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop 0.0035 8 26.60 126 145
Thymidylate_kin Thymidylate kinase 6.9E-05 13 21.10 126 192
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0019 9 27.00 250 292
NTPase_1 NTPase 0.12 3 23.90 270 303
ABC2_membrane_7 ABC-2 type transporter 6.5E-09 26 22.70 290 346
ABC2_membrane ABC-2 type transporter 0 145 25.50 423 631
ABC2_membrane_7 ABC-2 type transporter 0.85 -1 22.70 482 536
ABC2_membrane_3 ABC-2 family transporter protein 8.2E-06 16 31.60 503 616
ABC2_membrane_7 ABC-2 type transporter 0.72 -1 22.70 685 721

727

CLP1_P
RsgA_GTPase
MeaB
ABC_tran
AAA_16
AAA_25
AAA_22
AAA_29
SMC_N
NACHT
DUF87
MMR_HSR1
AAA_21
AAA_28
AAA_23
NTPase_1
RNA_helicase
AAA_18
CLP1_P
Thymidylate_kin
AAA_21
NTPase_1
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_7
ABC2_membrane_3
ABC2_membrane_7

References:

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

RsgA_GTPase

Thymidylate_kin

ABC2_membrane_3

AAA_23

ABC2_membrane_7

MeaB

NTPase_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

DUF87

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_29

AAA_28

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

CLP1_P

AAA_22

AAA_21

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	0.023	5	26.60	31	83
RsgA_GTPase	RsgA GTPase	6.1E-06	17	30.00	102	142
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	4E-05	13	23.10	103	145
ABC_tran	ABC transporter	2.5E-26	83	23.10	109	261
AAA_16	AAA ATPase domain	2.3E-07	22	32.60	116	156
AAA_25	AAA domain	3E-05	14	27.00	117	158
AAA_22	AAA domain	4.9E-05	14	27.00	118	145
AAA_29	P-loop containing region of AAA domain	4.2E-08	24	27.00	119	140
SMC_N	RecF/RecN/SMC N terminal domain	9.8E-05	12	40.00	120	291
NACHT	NACHT domain	1.4E-05	16	20.40	122	151
DUF87	Domain of unknown function DUF87	2.8E-05	15	20.90	122	147
MMR_HSR1	GTPase of unknown function	1.2E-05	16	24.50	123	157
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00016	12	27.00	123	140
AAA_28	AAA domain	8.9E-05	13	27.00	123	142
AAA_23	AAA domain	0.00039	12	27.00	123	139
NTPase_1	NTPase	0.0096	6	23.90	123	146
RNA_helicase	RNA helicase	9.1E-05	13	21.50	124	171
AAA_18	AAA domain	8.7E-05	14	29.40	124	166
CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	0.0035	8	26.60	126	145
Thymidylate_kin	Thymidylate kinase	6.9E-05	13	21.10	126	192
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0019	9	27.00	250	292
NTPase_1	NTPase	0.12	3	23.90	270	303
ABC2_membrane_7	ABC-2 type transporter	6.5E-09	26	22.70	290	346
ABC2_membrane	ABC-2 type transporter	0	145	25.50	423	631
ABC2_membrane_7	ABC-2 type transporter	0.85	-1	22.70	482	536
ABC2_membrane_3	ABC-2 family transporter protein	8.2E-06	16	31.60	503	616
ABC2_membrane_7	ABC-2 type transporter	0.72	-1	22.70	685	721