c2pfam

AT5G15160.1 :

Domain Description Evalue Bits GA Start End
FlxA FlxA-like protein 0.045 4 26.30 3 38
Takusan Takusan 0.75 0 28.00 9 20
DUF1018 Protein of unknown function (DUF1018) 3.5E-06 18 21.60 9 67
RNA_pol_Rpb4 RNA polymerase Rpb4 0.017 5 21.60 11 30
TipAS TipAS antibiotic-recognition domain 0.22 2 29.90 12 34
DUF4279 Domain of unknown function (DUF4279) 6.2E-05 13 25.00 14 78
Vps51 Vps51/Vps67 0.0001 12 20.80 18 79
CSN5_C Cop9 signalosome subunit 5 C-terminal domain 0.00011 13 27.00 19 48
HLH Helix-loop-helix DNA-binding domain 3.8E-08 23 20.70 19 60
Laminin_II Laminin Domain II 1.3E-06 18 27.70 22 80
RNA_pol_Rpb4 RNA polymerase Rpb4 0.004 7 21.60 37 75
Takusan Takusan 0.00014 12 28.00 40 76
FlxA FlxA-like protein 0.00024 11 26.30 42 84
DUF948 Bacterial protein of unknown function (DUF948) 5E-05 13 28.10 44 77
PspB Phage shock protein B 0.00014 12 24.30 46 84
TipAS TipAS antibiotic-recognition domain 0.00027 11 29.90 53 86
DUF4279 Domain of unknown function (DUF4279) 0.049 4 25.00 61 84
CSN5_C Cop9 signalosome subunit 5 C-terminal domain 0.31 2 27.00 61 85

FlxA
Takusan
DUF1018
RNA_pol_Rpb4
TipAS
DUF4279
Vps51
CSN5_C
HLH
Laminin_II
RNA_pol_Rpb4
Takusan
FlxA
DUF948
PspB
TipAS
DUF4279
CSN5_C

References:

Vps51
12377769 Vps51p links the VFT complex to the SNARE Tlg1p. J Biol Chem. 2002;277:48318-48324.
15932880 Cog1p plays a central role in the organization of the yeast conserved oligomeric Golgi complex. J Biol Chem. 2005;280:27613-27623.

FlxA

DUF948

DUF4279

Takusan

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

DUF1018

PspB
1712397 Characterization and sequence of the Escherichia coli stress-induced psp operon. J Mol Biol 1991;220:35-48.
12562786 Interactions between phage-shock proteins in Escherichia coli. J Bacteriol 2003;185:1174-1180.

CSN5_C

HLH
7553065 Transcription factors 2: helix-loop-helix. Protein Profile 1995;2:621-702.

RNA_pol_Rpb4
11741548 Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 2001;8:1137-1143.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
8065349 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Mol Cell Biol. 1994;14:6164-6170.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
16818233 Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model. Mol Cell. 2006;23:71-81.

TipAS
12682015 Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J 2003;22:1824-1834.

Domain	Description	Evalue	Bits	GA	Start	End
FlxA	FlxA-like protein	0.045	4	26.30	3	38
Takusan	Takusan	0.75	0	28.00	9	20
DUF1018	Protein of unknown function (DUF1018)	3.5E-06	18	21.60	9	67
RNA_pol_Rpb4	RNA polymerase Rpb4	0.017	5	21.60	11	30
TipAS	TipAS antibiotic-recognition domain	0.22	2	29.90	12	34
DUF4279	Domain of unknown function (DUF4279)	6.2E-05	13	25.00	14	78
Vps51	Vps51/Vps67	0.0001	12	20.80	18	79
CSN5_C	Cop9 signalosome subunit 5 C-terminal domain	0.00011	13	27.00	19	48
HLH	Helix-loop-helix DNA-binding domain	3.8E-08	23	20.70	19	60
Laminin_II	Laminin Domain II	1.3E-06	18	27.70	22	80
RNA_pol_Rpb4	RNA polymerase Rpb4	0.004	7	21.60	37	75
Takusan	Takusan	0.00014	12	28.00	40	76
FlxA	FlxA-like protein	0.00024	11	26.30	42	84
DUF948	Bacterial protein of unknown function (DUF948)	5E-05	13	28.10	44	77
PspB	Phage shock protein B	0.00014	12	24.30	46	84
TipAS	TipAS antibiotic-recognition domain	0.00027	11	29.90	53	86
DUF4279	Domain of unknown function (DUF4279)	0.049	4	25.00	61	84
CSN5_C	Cop9 signalosome subunit 5 C-terminal domain	0.31	2	27.00	61	85