c2pfam

AT5G15280.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.00066 9 25.00 152 177
PPR_2 PPR repeat family 0.014 5 30.00 155 177
PPR_long Pentacotripeptide-repeat region of PRORP 0.21 0 27.00 180 248
PPR_3 Pentatricopeptide repeat domain 0.086 2 25.00 186 226
PPR_2 PPR repeat family 5.2E-08 22 30.00 189 229
PPR PPR repeat 0.11 2 25.00 189 214
PPR_1 PPR repeat 0.44 0 23.80 212 238
Clathrin Region in Clathrin and VPS 0.39 0 23.60 260 281
PPR_2 PPR repeat family 0.47 0 30.00 262 292
PPR_1 PPR repeat 0.48 -1 23.80 320 335
PPR_2 PPR repeat family 1.9E-07 20 30.00 321 369
PPR_long Pentacotripeptide-repeat region of PRORP 0.00038 9 27.00 339 424
PPR_3 Pentatricopeptide repeat domain 8.3E-08 22 25.00 347 401
PPR_1 PPR repeat 6.6E-05 12 23.80 353 378
PPR PPR repeat 7.8E-05 12 25.00 359 388
ATP13 Mitochondrial ATPase expression 0.37 0 26.70 369 387
PPR_1 PPR repeat 5.6E-08 22 23.80 387 420
PPR_2 PPR repeat family 6.4E-15 44 30.00 391 440
PPR PPR repeat 7.2E-07 19 25.00 394 423
PPR_long Pentacotripeptide-repeat region of PRORP 0.0065 5 27.00 412 458
Mtf2 Mtf2 family 0.02 4 27.00 414 434
PPR_3 Pentatricopeptide repeat domain 9.4E-05 12 25.00 415 454
ATP13 Mitochondrial ATPase expression 0.043 3 26.70 421 455
PPR_1 PPR repeat 1.1E-07 21 23.80 423 454
PPR PPR repeat 5.5E-08 22 25.00 429 458
PPR_2 PPR repeat family 0.00018 11 30.00 433 455
PPR_3 Pentatricopeptide repeat domain 0.024 4 25.00 530 570
PPR_2 PPR repeat family 5.8E-09 25 30.00 531 574
PPR PPR repeat 0.00044 10 25.00 531 558
PPR_1 PPR repeat 0.0022 7 23.80 533 554
PPR_long Pentacotripeptide-repeat region of PRORP 0.00064 8 27.00 535 576
PPR_1 PPR repeat 0.019 4 23.80 601 616
PPR PPR repeat 0.00053 10 25.00 601 628
PPR_2 PPR repeat family 5.5E-09 25 30.00 601 646
Clathrin Region in Clathrin and VPS 0.51 -1 23.60 605 656
PPR_long Pentacotripeptide-repeat region of PRORP 0.34 -1 27.00 621 652
PPR_3 Pentatricopeptide repeat domain 0.0093 5 25.00 621 656
PPR_1 PPR repeat 1.7E-06 17 23.80 632 648
PPR PPR repeat 0.00023 11 25.00 635 647
PPR PPR repeat 0.004 7 25.00 677 694
PPR_2 PPR repeat family 0.19 1 30.00 677 693
PPR_long Pentacotripeptide-repeat region of PRORP 0.00088 8 27.00 726 806
PPR_3 Pentatricopeptide repeat domain 5.9E-05 12 25.00 741 773
PPR_1 PPR repeat 5.8E-06 15 23.80 741 765
PPR_2 PPR repeat family 8.2E-09 25 30.00 741 786
PPR PPR repeat 1.7E-05 14 25.00 741 768
PPR_1 PPR repeat 0.054 3 23.80 780 798
PPR PPR repeat 0.0031 7 25.00 808 834
PPR_1 PPR repeat 0.13 1 23.80 809 829
PPR_1 PPR repeat 0.021 4 23.80 840 864
PPR PPR repeat 7.1E-08 22 25.00 840 869
PPR_2 PPR repeat family 1.5E-06 18 30.00 840 877
PPR_2 PPR repeat family 2.8E-11 33 30.00 909 955
PPR_1 PPR repeat 0.56 -1 23.80 909 917
PPR_3 Pentatricopeptide repeat domain 1.9E-06 17 25.00 909 952
PPR PPR repeat 0.00094 9 25.00 911 940
PPR_long Pentacotripeptide-repeat region of PRORP 5.3E-08 22 27.00 926 1016
Mtf2 Mtf2 family 0.014 4 27.00 926 950
PPR_1 PPR repeat 0.00019 10 23.80 938 954
ATP13 Mitochondrial ATPase expression 0.18 1 26.70 940 972
PPR PPR repeat 0.0011 9 25.00 946 974
PPR_2 PPR repeat family 5.6E-05 13 30.00 946 990
PPR_1 PPR repeat 3E-06 16 23.80 973 1006
ATP13 Mitochondrial ATPase expression 0.00076 9 26.70 975 1002
PPR_2 PPR repeat family 0.00025 11 30.00 987 1010
PPR PPR repeat 1.3E-05 15 25.00 987 1009
Clathrin Region in Clathrin and VPS 0.65 -1 23.60 1016 1040
Clathrin Region in Clathrin and VPS 0.0032 7 23.60 1050 1105
PPR PPR repeat 0.071 3 25.00 1051 1077
PPR_2 PPR repeat family 1.6E-06 18 30.00 1051 1093
PPR_3 Pentatricopeptide repeat domain 0.11 2 25.00 1051 1091
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-05 11 27.00 1053 1119
PPR_1 PPR repeat 0.047 3 23.80 1054 1074
PPR_2 PPR repeat family 1.3E-11 34 30.00 1081 1129
PPR_1 PPR repeat 0.0011 8 23.80 1084 1110
PPR PPR repeat 1.4E-06 18 25.00 1085 1114
PPR_3 Pentatricopeptide repeat domain 0.037 3 25.00 1086 1125
PPR_long Pentacotripeptide-repeat region of PRORP 0.036 2 27.00 1113 1186
PPR_1 PPR repeat 0.00026 10 23.80 1113 1145
PPR PPR repeat 0.0016 8 25.00 1119 1148
PPR_3 Pentatricopeptide repeat domain 0.27 1 25.00 1142 1183
PPR PPR repeat 0.0063 6 25.00 1155 1183
PPR_2 PPR repeat family 0.00058 9 30.00 1156 1197

1227

PPR
PPR_2
PPR_long
PPR_3
PPR_2
PPR
PPR_1
Clathrin
PPR_2
PPR_1
PPR_2
PPR_long
PPR_3
PPR_1
PPR
ATP13
PPR_1
PPR_2
PPR
PPR_long
Mtf2
PPR_3
ATP13
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_1
PPR_long
PPR_1
PPR
PPR_2
Clathrin
PPR_long
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
Mtf2
PPR_1
ATP13
PPR
PPR_2
PPR_1
ATP13
PPR_2
PPR
Clathrin
Clathrin
PPR
PPR_2
PPR_3
PPR_long
PPR_1
PPR_2
PPR_1
PPR
PPR_3
PPR_long
PPR_1
PPR
PPR_3
PPR
PPR_2

References:

Mtf2

ATP13

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.00066	9	25.00	152	177
PPR_2	PPR repeat family	0.014	5	30.00	155	177
PPR_long	Pentacotripeptide-repeat region of PRORP	0.21	0	27.00	180	248
PPR_3	Pentatricopeptide repeat domain	0.086	2	25.00	186	226
PPR_2	PPR repeat family	5.2E-08	22	30.00	189	229
PPR	PPR repeat	0.11	2	25.00	189	214
PPR_1	PPR repeat	0.44	0	23.80	212	238
Clathrin	Region in Clathrin and VPS	0.39	0	23.60	260	281
PPR_2	PPR repeat family	0.47	0	30.00	262	292
PPR_1	PPR repeat	0.48	-1	23.80	320	335
PPR_2	PPR repeat family	1.9E-07	20	30.00	321	369
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00038	9	27.00	339	424
PPR_3	Pentatricopeptide repeat domain	8.3E-08	22	25.00	347	401
PPR_1	PPR repeat	6.6E-05	12	23.80	353	378
PPR	PPR repeat	7.8E-05	12	25.00	359	388
ATP13	Mitochondrial ATPase expression	0.37	0	26.70	369	387
PPR_1	PPR repeat	5.6E-08	22	23.80	387	420
PPR_2	PPR repeat family	6.4E-15	44	30.00	391	440
PPR	PPR repeat	7.2E-07	19	25.00	394	423
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0065	5	27.00	412	458
Mtf2	Mtf2 family	0.02	4	27.00	414	434
PPR_3	Pentatricopeptide repeat domain	9.4E-05	12	25.00	415	454
ATP13	Mitochondrial ATPase expression	0.043	3	26.70	421	455
PPR_1	PPR repeat	1.1E-07	21	23.80	423	454
PPR	PPR repeat	5.5E-08	22	25.00	429	458
PPR_2	PPR repeat family	0.00018	11	30.00	433	455
PPR_3	Pentatricopeptide repeat domain	0.024	4	25.00	530	570
PPR_2	PPR repeat family	5.8E-09	25	30.00	531	574
PPR	PPR repeat	0.00044	10	25.00	531	558
PPR_1	PPR repeat	0.0022	7	23.80	533	554
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00064	8	27.00	535	576
PPR_1	PPR repeat	0.019	4	23.80	601	616
PPR	PPR repeat	0.00053	10	25.00	601	628
PPR_2	PPR repeat family	5.5E-09	25	30.00	601	646
Clathrin	Region in Clathrin and VPS	0.51	-1	23.60	605	656
PPR_long	Pentacotripeptide-repeat region of PRORP	0.34	-1	27.00	621	652
PPR_3	Pentatricopeptide repeat domain	0.0093	5	25.00	621	656
PPR_1	PPR repeat	1.7E-06	17	23.80	632	648
PPR	PPR repeat	0.00023	11	25.00	635	647
PPR	PPR repeat	0.004	7	25.00	677	694
PPR_2	PPR repeat family	0.19	1	30.00	677	693
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00088	8	27.00	726	806
PPR_3	Pentatricopeptide repeat domain	5.9E-05	12	25.00	741	773
PPR_1	PPR repeat	5.8E-06	15	23.80	741	765
PPR_2	PPR repeat family	8.2E-09	25	30.00	741	786
PPR	PPR repeat	1.7E-05	14	25.00	741	768
PPR_1	PPR repeat	0.054	3	23.80	780	798
PPR	PPR repeat	0.0031	7	25.00	808	834
PPR_1	PPR repeat	0.13	1	23.80	809	829
PPR_1	PPR repeat	0.021	4	23.80	840	864
PPR	PPR repeat	7.1E-08	22	25.00	840	869
PPR_2	PPR repeat family	1.5E-06	18	30.00	840	877
PPR_2	PPR repeat family	2.8E-11	33	30.00	909	955
PPR_1	PPR repeat	0.56	-1	23.80	909	917
PPR_3	Pentatricopeptide repeat domain	1.9E-06	17	25.00	909	952
PPR	PPR repeat	0.00094	9	25.00	911	940
PPR_long	Pentacotripeptide-repeat region of PRORP	5.3E-08	22	27.00	926	1016
Mtf2	Mtf2 family	0.014	4	27.00	926	950
PPR_1	PPR repeat	0.00019	10	23.80	938	954
ATP13	Mitochondrial ATPase expression	0.18	1	26.70	940	972
PPR	PPR repeat	0.0011	9	25.00	946	974
PPR_2	PPR repeat family	5.6E-05	13	30.00	946	990
PPR_1	PPR repeat	3E-06	16	23.80	973	1006
ATP13	Mitochondrial ATPase expression	0.00076	9	26.70	975	1002
PPR_2	PPR repeat family	0.00025	11	30.00	987	1010
PPR	PPR repeat	1.3E-05	15	25.00	987	1009
Clathrin	Region in Clathrin and VPS	0.65	-1	23.60	1016	1040
Clathrin	Region in Clathrin and VPS	0.0032	7	23.60	1050	1105
PPR	PPR repeat	0.071	3	25.00	1051	1077
PPR_2	PPR repeat family	1.6E-06	18	30.00	1051	1093
PPR_3	Pentatricopeptide repeat domain	0.11	2	25.00	1051	1091
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-05	11	27.00	1053	1119
PPR_1	PPR repeat	0.047	3	23.80	1054	1074
PPR_2	PPR repeat family	1.3E-11	34	30.00	1081	1129
PPR_1	PPR repeat	0.0011	8	23.80	1084	1110
PPR	PPR repeat	1.4E-06	18	25.00	1085	1114
PPR_3	Pentatricopeptide repeat domain	0.037	3	25.00	1086	1125
PPR_long	Pentacotripeptide-repeat region of PRORP	0.036	2	27.00	1113	1186
PPR_1	PPR repeat	0.00026	10	23.80	1113	1145
PPR	PPR repeat	0.0016	8	25.00	1119	1148
PPR_3	Pentatricopeptide repeat domain	0.27	1	25.00	1142	1183
PPR	PPR repeat	0.0063	6	25.00	1155	1183
PPR_2	PPR repeat family	0.00058	9	30.00	1156	1197