c2pfam

AT5G15340.1 :

Domain Description Evalue Bits GA Start End
TPR_19 Tetratricopeptide repeat 0.001 9 25.00 43 83
RPN7 26S proteasome subunit RPN7 0.024 3 25.30 46 69
PPR PPR repeat 0.0018 8 25.00 47 69
PPR_2 PPR repeat family 0.017 5 30.00 47 68
PPR_1 PPR repeat 0.091 2 23.80 56 68
PPR_1 PPR repeat 0.00026 10 23.80 75 103
PPR_3 Pentatricopeptide repeat domain 0.018 4 25.00 75 108
PPR_2 PPR repeat family 6.1E-08 22 30.00 75 122
PPR PPR repeat 4.8E-07 19 25.00 79 106
PPR_long Pentacotripeptide-repeat region of PRORP 0.37 -1 27.00 94 126
PPR_3 Pentatricopeptide repeat domain 0.015 5 25.00 140 177
PPR_2 PPR repeat family 5.9E-06 16 30.00 146 177
PPR PPR repeat 8.2E-08 22 25.00 149 176
PPR_1 PPR repeat 0.07 2 23.80 150 172
RPN7 26S proteasome subunit RPN7 0.14 1 25.30 150 179
PPR_2 PPR repeat family 0.00085 9 30.00 175 207
PPR PPR repeat 0.0015 8 25.00 178 207
PPR_2 PPR repeat family 2.2E-07 20 30.00 207 255
PPR PPR repeat 3.4E-06 16 25.00 209 235
PPR_3 Pentatricopeptide repeat domain 0.09 2 25.00 238 260
PPR PPR repeat 0.0075 6 25.00 245 260
PPR_long Pentacotripeptide-repeat region of PRORP 0.12 1 27.00 268 317
PPR_2 PPR repeat family 0.00034 10 30.00 285 317
PPR_3 Pentatricopeptide repeat domain 0.00075 9 25.00 286 324
PPR_1 PPR repeat 0.00034 10 23.80 290 313
PPR PPR repeat 9.7E-07 18 25.00 290 317
RPN7 26S proteasome subunit RPN7 0.039 3 25.30 290 316
PPR_2 PPR repeat family 5.4E-12 35 30.00 315 362
PPR_1 PPR repeat 0.0091 5 23.80 315 331
PPR_3 Pentatricopeptide repeat domain 7.6E-05 12 25.00 315 361
PPR PPR repeat 2E-07 20 25.00 318 345
PPR_long Pentacotripeptide-repeat region of PRORP 0.00024 10 27.00 338 433
PPR_3 Pentatricopeptide repeat domain 0.00066 9 25.00 345 397
PPR_1 PPR repeat 0.062 2 23.80 346 362
PPR_2 PPR repeat family 2.6E-05 14 30.00 349 384
PPR PPR repeat 0.00044 10 25.00 353 379
PPR_1 PPR repeat 1.3E-06 17 23.80 381 412
PPR_2 PPR repeat family 0.0016 8 30.00 385 419
PPR PPR repeat 1.1E-05 15 25.00 389 412
PPR_1 PPR repeat 0.56 -1 23.80 415 443
PPR_2 PPR repeat family 0.66 -1 30.00 416 441
PPR PPR repeat 0.0072 6 25.00 421 446
TPR_19 Tetratricopeptide repeat 0.049 3 25.00 442 469
PPR PPR repeat 0.21 1 25.00 458 483
DYW_deaminase DYW family of nucleic acid deaminases 0 126 31.60 488 613

623

TPR_19
RPN7
PPR
PPR_2
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_2
PPR
PPR_1
RPN7
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
PPR_long
PPR_2
PPR_3
PPR_1
PPR
RPN7
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_19
PPR
DYW_deaminase

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_19

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_19	Tetratricopeptide repeat	0.001	9	25.00	43	83
RPN7	26S proteasome subunit RPN7	0.024	3	25.30	46	69
PPR	PPR repeat	0.0018	8	25.00	47	69
PPR_2	PPR repeat family	0.017	5	30.00	47	68
PPR_1	PPR repeat	0.091	2	23.80	56	68
PPR_1	PPR repeat	0.00026	10	23.80	75	103
PPR_3	Pentatricopeptide repeat domain	0.018	4	25.00	75	108
PPR_2	PPR repeat family	6.1E-08	22	30.00	75	122
PPR	PPR repeat	4.8E-07	19	25.00	79	106
PPR_long	Pentacotripeptide-repeat region of PRORP	0.37	-1	27.00	94	126
PPR_3	Pentatricopeptide repeat domain	0.015	5	25.00	140	177
PPR_2	PPR repeat family	5.9E-06	16	30.00	146	177
PPR	PPR repeat	8.2E-08	22	25.00	149	176
PPR_1	PPR repeat	0.07	2	23.80	150	172
RPN7	26S proteasome subunit RPN7	0.14	1	25.30	150	179
PPR_2	PPR repeat family	0.00085	9	30.00	175	207
PPR	PPR repeat	0.0015	8	25.00	178	207
PPR_2	PPR repeat family	2.2E-07	20	30.00	207	255
PPR	PPR repeat	3.4E-06	16	25.00	209	235
PPR_3	Pentatricopeptide repeat domain	0.09	2	25.00	238	260
PPR	PPR repeat	0.0075	6	25.00	245	260
PPR_long	Pentacotripeptide-repeat region of PRORP	0.12	1	27.00	268	317
PPR_2	PPR repeat family	0.00034	10	30.00	285	317
PPR_3	Pentatricopeptide repeat domain	0.00075	9	25.00	286	324
PPR_1	PPR repeat	0.00034	10	23.80	290	313
PPR	PPR repeat	9.7E-07	18	25.00	290	317
RPN7	26S proteasome subunit RPN7	0.039	3	25.30	290	316
PPR_2	PPR repeat family	5.4E-12	35	30.00	315	362
PPR_1	PPR repeat	0.0091	5	23.80	315	331
PPR_3	Pentatricopeptide repeat domain	7.6E-05	12	25.00	315	361
PPR	PPR repeat	2E-07	20	25.00	318	345
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00024	10	27.00	338	433
PPR_3	Pentatricopeptide repeat domain	0.00066	9	25.00	345	397
PPR_1	PPR repeat	0.062	2	23.80	346	362
PPR_2	PPR repeat family	2.6E-05	14	30.00	349	384
PPR	PPR repeat	0.00044	10	25.00	353	379
PPR_1	PPR repeat	1.3E-06	17	23.80	381	412
PPR_2	PPR repeat family	0.0016	8	30.00	385	419
PPR	PPR repeat	1.1E-05	15	25.00	389	412
PPR_1	PPR repeat	0.56	-1	23.80	415	443
PPR_2	PPR repeat family	0.66	-1	30.00	416	441
PPR	PPR repeat	0.0072	6	25.00	421	446
TPR_19	Tetratricopeptide repeat	0.049	3	25.00	442	469
PPR	PPR repeat	0.21	1	25.00	458	483
DYW_deaminase	DYW family of nucleic acid deaminases	0	126	31.60	488	613