c2pfam

AT5G15450.1 :

Domain Description Evalue Bits GA Start End
AAA_22 AAA domain 0.41 2 27.00 53 118
Clp_N Clp amino terminal domain 5.5E-17 53 20.70 95 144
Clp_N Clp amino terminal domain 9.6E-15 46 20.70 170 221
AAA_16 AAA ATPase domain 1.6E-06 20 32.60 256 301
Sigma54_activat Sigma-54 interaction domain 0.0027 9 20.20 257 358
ATPase_2 ATPase domain predominantly from Archaea 0.024 6 33.20 259 293
Zeta_toxin Zeta toxin 0.021 5 20.10 262 299
ResIII Type III restriction enzyme, res subunit 0.46 2 20.90 263 300
Mg_chelatase Magnesium chelatase, subunit ChlI 0.014 6 20.30 264 313
PhoH PhoH-like protein 0.062 4 20.10 267 344
RsgA_GTPase RsgA GTPase 0.032 5 30.00 268 298
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.011 7 26.60 268 299
IstB_IS21 IstB-like ATP binding protein 0.0009 10 24.10 273 304
AAA_22 AAA domain 0.00076 11 27.00 274 302
AAA_7 P-loop containing dynein motor region 0.012 6 25.80 274 302
Bac_DnaA Bacterial dnaA protein 0.52 1 20.40 275 301
AAA_24 AAA domain 0.035 5 27.00 277 295
AAA_2 AAA domain (Cdc48 subfamily) 0.00098 11 20.60 278 361
AAA ATPase family associated with various cellular activities (AAA) 2E-15 49 20.80 279 411
AAA_5 AAA domain (dynein-related subfamily) 4E-06 18 20.80 279 358
AAA_14 AAA domain 0.00066 11 27.00 279 362
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0085 7 20.00 279 358
Roc Ras of Complex, Roc, domain of DAPkinase 0.014 7 27.00 279 299
AAA_33 AAA domain 0.027 6 27.00 279 298
NACHT NACHT domain 0.00085 11 20.40 279 307
AAA_28 AAA domain 0.024 6 27.00 279 298
AAA_25 AAA domain 0.0015 9 27.00 279 353
ABC_tran ABC transporter 0.54 2 23.10 279 297
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.24 3 20.50 279 301
SRP54 SRP54-type protein, GTPase domain 0.52 1 20.50 279 301
AAA_3 ATPase family associated with various cellular activities (AAA) 0.13 3 21.10 280 299
RNA_helicase RNA helicase 0.012 7 21.50 280 300
AAA_18 AAA domain 0.0042 9 29.40 280 299
TniB Bacterial TniB protein 2.7E-05 15 20.10 299 414
ATPase_2 ATPase domain predominantly from Archaea 0.009 7 33.20 331 365
AAA_lid_9 AAA lid domain 2.2E-36 115 22.80 418 520
T3SS_needle_E Type III secretion system, cytoplasmic E component of needle 0.0013 10 21.80 582 605
Torsin Torsin 0.00036 12 20.90 638 704
AAA_16 AAA ATPase domain 0.00085 11 32.60 651 702
Sigma54_activat Sigma-54 interaction domain 8.3E-09 27 20.20 652 799
ResIII Type III restriction enzyme, res subunit 0.0019 9 20.90 653 705
RsgA_GTPase RsgA GTPase 0.0012 10 30.00 657 701
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0029 9 26.60 672 702
Bac_DnaA Bacterial dnaA protein 0.0039 8 20.40 673 708
TniB Bacterial TniB protein 0.23 2 20.10 673 699
Zeta_toxin Zeta toxin 0.00012 13 20.10 673 721
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0026 9 20.00 675 702
AAA_2 AAA domain (Cdc48 subfamily) 0 187 20.60 676 843
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0012 10 20.30 680 707
AAA_7 P-loop containing dynein motor region 6E-05 14 25.80 680 727
IstB_IS21 IstB-like ATP binding protein 0.00037 11 24.10 681 704
AAA_5 AAA domain (dynein-related subfamily) 1.1E-13 43 20.80 681 804
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.0016 10 20.50 681 700
AAA_24 AAA domain 0.00031 12 27.00 681 762
SRP54 SRP54-type protein, GTPase domain 0.0022 9 20.50 681 706
Roc Ras of Complex, Roc, domain of DAPkinase 0.0015 10 27.00 682 715
AAA_25 AAA domain 0.055 4 27.00 682 702
AAA_28 AAA domain 0.0034 9 27.00 682 701
AAA_33 AAA domain 0.0035 9 27.00 682 716
PhoH PhoH-like protein 0.011 6 20.10 682 706
ABC_tran ABC transporter 0.0015 10 23.10 682 716
AAA ATPase family associated with various cellular activities (AAA) 5.9E-12 37 20.80 682 799
AAA_22 AAA domain 0.0018 10 27.00 682 770
RNA_helicase RNA helicase 0.0013 10 21.50 682 704
AAA_18 AAA domain 0.00029 13 29.40 683 704
NACHT NACHT domain 0.058 5 20.40 683 700
ATPase_2 ATPase domain predominantly from Archaea 0.11 4 33.20 684 706
AAA_14 AAA domain 0.00046 12 27.00 684 777
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0026 9 21.10 685 798
Mg_chelatase Magnesium chelatase, subunit ChlI 0.67 1 20.30 752 800
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 5E-28 88 21.40 850 928

968

AAA_22
Clp_N
Clp_N
AAA_16
Sigma54_activat
ATPase_2
Zeta_toxin
ResIII
Mg_chelatase
PhoH
RsgA_GTPase
TsaE
IstB_IS21
AAA_22
AAA_7
Bac_DnaA
AAA_24
AAA_2
AAA
AAA_5
AAA_14
RuvB_N
Roc
AAA_33
NACHT
AAA_28
AAA_25
ABC_tran
PduV-EutP
SRP54
AAA_3
RNA_helicase
AAA_18
TniB
ATPase_2
AAA_lid_9
T3SS_needle_E
Torsin
AAA_16
Sigma54_activat
ResIII
RsgA_GTPase
TsaE
Bac_DnaA
TniB
Zeta_toxin
RuvB_N
AAA_2
Mg_chelatase
AAA_7
IstB_IS21
AAA_5
PduV-EutP
AAA_24
SRP54
Roc
AAA_25
AAA_28
AAA_33
PhoH
ABC_tran
AAA
AAA_22
RNA_helicase
AAA_18
NACHT
ATPase_2
AAA_14
AAA_3
Mg_chelatase
ClpB_D2-small

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

T3SS_needle_E

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

TsaE

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

ATPase_2

AAA_24

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

Roc

AAA_22

AAA_18

AAA_16

AAA_14

Bac_DnaA

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

RsgA_GTPase

Domain	Description	Evalue	Bits	GA	Start	End
AAA_22	AAA domain	0.41	2	27.00	53	118
Clp_N	Clp amino terminal domain	5.5E-17	53	20.70	95	144
Clp_N	Clp amino terminal domain	9.6E-15	46	20.70	170	221
AAA_16	AAA ATPase domain	1.6E-06	20	32.60	256	301
Sigma54_activat	Sigma-54 interaction domain	0.0027	9	20.20	257	358
ATPase_2	ATPase domain predominantly from Archaea	0.024	6	33.20	259	293
Zeta_toxin	Zeta toxin	0.021	5	20.10	262	299
ResIII	Type III restriction enzyme, res subunit	0.46	2	20.90	263	300
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.014	6	20.30	264	313
PhoH	PhoH-like protein	0.062	4	20.10	267	344
RsgA_GTPase	RsgA GTPase	0.032	5	30.00	268	298
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.011	7	26.60	268	299
IstB_IS21	IstB-like ATP binding protein	0.0009	10	24.10	273	304
AAA_22	AAA domain	0.00076	11	27.00	274	302
AAA_7	P-loop containing dynein motor region	0.012	6	25.80	274	302
Bac_DnaA	Bacterial dnaA protein	0.52	1	20.40	275	301
AAA_24	AAA domain	0.035	5	27.00	277	295
AAA_2	AAA domain (Cdc48 subfamily)	0.00098	11	20.60	278	361
AAA	ATPase family associated with various cellular activities (AAA)	2E-15	49	20.80	279	411
AAA_5	AAA domain (dynein-related subfamily)	4E-06	18	20.80	279	358
AAA_14	AAA domain	0.00066	11	27.00	279	362
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0085	7	20.00	279	358
Roc	Ras of Complex, Roc, domain of DAPkinase	0.014	7	27.00	279	299
AAA_33	AAA domain	0.027	6	27.00	279	298
NACHT	NACHT domain	0.00085	11	20.40	279	307
AAA_28	AAA domain	0.024	6	27.00	279	298
AAA_25	AAA domain	0.0015	9	27.00	279	353
ABC_tran	ABC transporter	0.54	2	23.10	279	297
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.24	3	20.50	279	301
SRP54	SRP54-type protein, GTPase domain	0.52	1	20.50	279	301
AAA_3	ATPase family associated with various cellular activities (AAA)	0.13	3	21.10	280	299
RNA_helicase	RNA helicase	0.012	7	21.50	280	300
AAA_18	AAA domain	0.0042	9	29.40	280	299
TniB	Bacterial TniB protein	2.7E-05	15	20.10	299	414
ATPase_2	ATPase domain predominantly from Archaea	0.009	7	33.20	331	365
AAA_lid_9	AAA lid domain	2.2E-36	115	22.80	418	520
T3SS_needle_E	Type III secretion system, cytoplasmic E component of needle	0.0013	10	21.80	582	605
Torsin	Torsin	0.00036	12	20.90	638	704
AAA_16	AAA ATPase domain	0.00085	11	32.60	651	702
Sigma54_activat	Sigma-54 interaction domain	8.3E-09	27	20.20	652	799
ResIII	Type III restriction enzyme, res subunit	0.0019	9	20.90	653	705
RsgA_GTPase	RsgA GTPase	0.0012	10	30.00	657	701
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0029	9	26.60	672	702
Bac_DnaA	Bacterial dnaA protein	0.0039	8	20.40	673	708
TniB	Bacterial TniB protein	0.23	2	20.10	673	699
Zeta_toxin	Zeta toxin	0.00012	13	20.10	673	721
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0026	9	20.00	675	702
AAA_2	AAA domain (Cdc48 subfamily)	0	187	20.60	676	843
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0012	10	20.30	680	707
AAA_7	P-loop containing dynein motor region	6E-05	14	25.80	680	727
IstB_IS21	IstB-like ATP binding protein	0.00037	11	24.10	681	704
AAA_5	AAA domain (dynein-related subfamily)	1.1E-13	43	20.80	681	804
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.0016	10	20.50	681	700
AAA_24	AAA domain	0.00031	12	27.00	681	762
SRP54	SRP54-type protein, GTPase domain	0.0022	9	20.50	681	706
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0015	10	27.00	682	715
AAA_25	AAA domain	0.055	4	27.00	682	702
AAA_28	AAA domain	0.0034	9	27.00	682	701
AAA_33	AAA domain	0.0035	9	27.00	682	716
PhoH	PhoH-like protein	0.011	6	20.10	682	706
ABC_tran	ABC transporter	0.0015	10	23.10	682	716
AAA	ATPase family associated with various cellular activities (AAA)	5.9E-12	37	20.80	682	799
AAA_22	AAA domain	0.0018	10	27.00	682	770
RNA_helicase	RNA helicase	0.0013	10	21.50	682	704
AAA_18	AAA domain	0.00029	13	29.40	683	704
NACHT	NACHT domain	0.058	5	20.40	683	700
ATPase_2	ATPase domain predominantly from Archaea	0.11	4	33.20	684	706
AAA_14	AAA domain	0.00046	12	27.00	684	777
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0026	9	21.10	685	798
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.67	1	20.30	752	800
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	5E-28	88	21.40	850	928