c2pfam

AT5G16860.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.13 3 25.00 64 84
PPR_2 PPR repeat family 7.3E-08 22 30.00 92 137
PPR_1 PPR repeat 0.18 2 23.80 92 106
PPR_3 Pentatricopeptide repeat domain 0.0052 7 25.00 92 139
PPR PPR repeat 4.8E-07 20 25.00 94 120
PPR_3 Pentatricopeptide repeat domain 0.088 3 25.00 160 188
PPR_2 PPR repeat family 2.7E-05 14 30.00 161 191
AEP1 ATPase expression protein 1 0.24 0 27.00 165 206
PPR PPR repeat 5.1E-05 13 25.00 166 189
PPR_1 PPR repeat 0.0018 8 23.80 166 189
PPR_long Pentacotripeptide-repeat region of PRORP 0.64 -1 27.00 175 210
PPR_1 PPR repeat 4.7E-07 19 23.80 192 220
PPR_3 Pentatricopeptide repeat domain 1.8E-05 15 25.00 192 231
PPR_2 PPR repeat family 1.4E-10 31 30.00 192 232
PPR PPR repeat 3.2E-09 27 25.00 194 220
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.5 0 28.10 199 222
TPR_2 Tetratricopeptide repeat 0.47 1 22.40 202 218
PPR_2 PPR repeat family 0.00015 12 30.00 265 291
AEP1 ATPase expression protein 1 0.14 1 27.00 266 300
PPR PPR repeat 2.9E-06 17 25.00 268 293
PPR_1 PPR repeat 8.8E-05 12 23.80 268 290
RPN7 26S proteasome subunit RPN7 0.17 1 25.30 270 292
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-06 18 27.00 278 380
PPR_2 PPR repeat family 6.8E-16 48 30.00 293 341
PPR_1 PPR repeat 2.6E-08 23 23.80 294 322
PPR_3 Pentatricopeptide repeat domain 2.7E-06 17 25.00 294 340
PPR PPR repeat 3.6E-11 33 25.00 296 325
TPR_14 Tetratricopeptide repeat 0.017 6 23.50 298 321
TPR_7 Tetratricopeptide repeat 0.00056 10 27.90 298 320
TPR_10 Tetratricopeptide repeat 0.0046 7 27.50 301 320
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.16 2 28.10 302 324
RPN7 26S proteasome subunit RPN7 0.14 2 25.30 304 328
TPR_2 Tetratricopeptide repeat 0.036 4 22.40 305 320
PPR_3 Pentatricopeptide repeat domain 6.1E-08 23 25.00 316 373
PPR_1 PPR repeat 6.2E-05 13 23.80 326 356
PPR_2 PPR repeat family 5.7E-11 32 30.00 329 376
PPR PPR repeat 3.8E-08 23 25.00 331 361
TPR_14 Tetratricopeptide repeat 0.37 2 23.50 332 358
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 353 380
PPR_1 PPR repeat 0.18 2 23.80 360 374
AEP1 ATPase expression protein 1 0.065 2 27.00 407 433
PPR_2 PPR repeat family 0.0079 6 30.00 410 432
PPR PPR repeat 0.00057 10 25.00 411 432
PPR_1 PPR repeat 0.0032 7 23.80 411 431
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.079 3 28.10 412 433
PPR_1 PPR repeat 1.5E-08 24 23.80 438 466
PPR_2 PPR repeat family 3.3E-12 36 30.00 438 488
PPR_3 Pentatricopeptide repeat domain 0.00014 12 25.00 439 479
PPR PPR repeat 3.8E-11 33 25.00 441 471
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.36 1 28.10 447 469
PPR_long Pentacotripeptide-repeat region of PRORP 0.0099 5 27.00 450 489
RPN7 26S proteasome subunit RPN7 0.077 3 25.30 450 473
AEP1 ATPase expression protein 1 0.012 4 27.00 515 553
PPR PPR repeat 6.9E-06 16 25.00 517 542
PPR_2 PPR repeat family 0.00018 12 30.00 517 542
PPR_1 PPR repeat 0.0002 11 23.80 517 539
PPR_2 PPR repeat family 1.1E-10 32 30.00 542 589
PPR_1 PPR repeat 7.4E-06 16 23.80 543 571
PPR_3 Pentatricopeptide repeat domain 0.0087 6 25.00 543 572
PPR PPR repeat 5.4E-12 35 25.00 545 575
PPR_long Pentacotripeptide-repeat region of PRORP 2.6E-05 13 27.00 562 641
PPR_3 Pentatricopeptide repeat domain 4E-05 14 25.00 566 622
PPR PPR repeat 0.00011 12 25.00 581 606
PPR_2 PPR repeat family 0.047 4 30.00 586 613
PPR_1 PPR repeat 1.6E-06 18 23.80 610 641
TPR_14 Tetratricopeptide repeat 0.11 4 23.50 616 640
PPR_2 PPR repeat family 0.0055 7 30.00 618 641
PPR PPR repeat 0.00012 12 25.00 618 642
TPR_10 Tetratricopeptide repeat 0.67 0 27.50 623 640
TPR_10 Tetratricopeptide repeat 0.42 1 27.50 683 698
TPR_7 Tetratricopeptide repeat 0.97 0 27.90 683 699
PPR PPR repeat 0.00075 10 25.00 683 712
PPR_3 Pentatricopeptide repeat domain 0.024 5 25.00 684 713
PPR_2 PPR repeat family 0.8 0 30.00 685 713
DYW_deaminase DYW family of nucleic acid deaminases 0 177 31.60 716 840
RPN7 26S proteasome subunit RPN7 0.49 0 25.30 810 827

850

PPR
PPR_2
PPR_1
PPR_3
PPR
PPR_3
PPR_2
AEP1
PPR
PPR_1
PPR_long
PPR_1
PPR_3
PPR_2
PPR
SPOB_a
TPR_2
PPR_2
AEP1
PPR
PPR_1
RPN7
PPR_long
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_7
TPR_10
SPOB_a
RPN7
TPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_14
PPR_3
PPR_1
AEP1
PPR_2
PPR
PPR_1
SPOB_a
PPR_1
PPR_2
PPR_3
PPR
SPOB_a
PPR_long
RPN7
AEP1
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR
PPR_2
PPR_1
TPR_14
PPR_2
PPR
TPR_10
TPR_10
TPR_7
PPR
PPR_3
PPR_2
DYW_deaminase
RPN7

References:

AEP1

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

DYW_deaminase

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

TPR_14

TPR_7

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.13	3	25.00	64	84
PPR_2	PPR repeat family	7.3E-08	22	30.00	92	137
PPR_1	PPR repeat	0.18	2	23.80	92	106
PPR_3	Pentatricopeptide repeat domain	0.0052	7	25.00	92	139
PPR	PPR repeat	4.8E-07	20	25.00	94	120
PPR_3	Pentatricopeptide repeat domain	0.088	3	25.00	160	188
PPR_2	PPR repeat family	2.7E-05	14	30.00	161	191
AEP1	ATPase expression protein 1	0.24	0	27.00	165	206
PPR	PPR repeat	5.1E-05	13	25.00	166	189
PPR_1	PPR repeat	0.0018	8	23.80	166	189
PPR_long	Pentacotripeptide-repeat region of PRORP	0.64	-1	27.00	175	210
PPR_1	PPR repeat	4.7E-07	19	23.80	192	220
PPR_3	Pentatricopeptide repeat domain	1.8E-05	15	25.00	192	231
PPR_2	PPR repeat family	1.4E-10	31	30.00	192	232
PPR	PPR repeat	3.2E-09	27	25.00	194	220
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.5	0	28.10	199	222
TPR_2	Tetratricopeptide repeat	0.47	1	22.40	202	218
PPR_2	PPR repeat family	0.00015	12	30.00	265	291
AEP1	ATPase expression protein 1	0.14	1	27.00	266	300
PPR	PPR repeat	2.9E-06	17	25.00	268	293
PPR_1	PPR repeat	8.8E-05	12	23.80	268	290
RPN7	26S proteasome subunit RPN7	0.17	1	25.30	270	292
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-06	18	27.00	278	380
PPR_2	PPR repeat family	6.8E-16	48	30.00	293	341
PPR_1	PPR repeat	2.6E-08	23	23.80	294	322
PPR_3	Pentatricopeptide repeat domain	2.7E-06	17	25.00	294	340
PPR	PPR repeat	3.6E-11	33	25.00	296	325
TPR_14	Tetratricopeptide repeat	0.017	6	23.50	298	321
TPR_7	Tetratricopeptide repeat	0.00056	10	27.90	298	320
TPR_10	Tetratricopeptide repeat	0.0046	7	27.50	301	320
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.16	2	28.10	302	324
RPN7	26S proteasome subunit RPN7	0.14	2	25.30	304	328
TPR_2	Tetratricopeptide repeat	0.036	4	22.40	305	320
PPR_3	Pentatricopeptide repeat domain	6.1E-08	23	25.00	316	373
PPR_1	PPR repeat	6.2E-05	13	23.80	326	356
PPR_2	PPR repeat family	5.7E-11	32	30.00	329	376
PPR	PPR repeat	3.8E-08	23	25.00	331	361
TPR_14	Tetratricopeptide repeat	0.37	2	23.50	332	358
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	353	380
PPR_1	PPR repeat	0.18	2	23.80	360	374
AEP1	ATPase expression protein 1	0.065	2	27.00	407	433
PPR_2	PPR repeat family	0.0079	6	30.00	410	432
PPR	PPR repeat	0.00057	10	25.00	411	432
PPR_1	PPR repeat	0.0032	7	23.80	411	431
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.079	3	28.10	412	433
PPR_1	PPR repeat	1.5E-08	24	23.80	438	466
PPR_2	PPR repeat family	3.3E-12	36	30.00	438	488
PPR_3	Pentatricopeptide repeat domain	0.00014	12	25.00	439	479
PPR	PPR repeat	3.8E-11	33	25.00	441	471
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.36	1	28.10	447	469
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0099	5	27.00	450	489
RPN7	26S proteasome subunit RPN7	0.077	3	25.30	450	473
AEP1	ATPase expression protein 1	0.012	4	27.00	515	553
PPR	PPR repeat	6.9E-06	16	25.00	517	542
PPR_2	PPR repeat family	0.00018	12	30.00	517	542
PPR_1	PPR repeat	0.0002	11	23.80	517	539
PPR_2	PPR repeat family	1.1E-10	32	30.00	542	589
PPR_1	PPR repeat	7.4E-06	16	23.80	543	571
PPR_3	Pentatricopeptide repeat domain	0.0087	6	25.00	543	572
PPR	PPR repeat	5.4E-12	35	25.00	545	575
PPR_long	Pentacotripeptide-repeat region of PRORP	2.6E-05	13	27.00	562	641
PPR_3	Pentatricopeptide repeat domain	4E-05	14	25.00	566	622
PPR	PPR repeat	0.00011	12	25.00	581	606
PPR_2	PPR repeat family	0.047	4	30.00	586	613
PPR_1	PPR repeat	1.6E-06	18	23.80	610	641
TPR_14	Tetratricopeptide repeat	0.11	4	23.50	616	640
PPR_2	PPR repeat family	0.0055	7	30.00	618	641
PPR	PPR repeat	0.00012	12	25.00	618	642
TPR_10	Tetratricopeptide repeat	0.67	0	27.50	623	640
TPR_10	Tetratricopeptide repeat	0.42	1	27.50	683	698
TPR_7	Tetratricopeptide repeat	0.97	0	27.90	683	699
PPR	PPR repeat	0.00075	10	25.00	683	712
PPR_3	Pentatricopeptide repeat domain	0.024	5	25.00	684	713
PPR_2	PPR repeat family	0.8	0	30.00	685	713
DYW_deaminase	DYW family of nucleic acid deaminases	0	177	31.60	716	840
RPN7	26S proteasome subunit RPN7	0.49	0	25.30	810	827