c2pfam

AT5G16880.1 :

Domain Description Evalue Bits GA Start End
VHS VHS domain 8.5E-30 92 20.60 47 179
AdoHcyase S-adenosyl-L-homocysteine hydrolase 0.89 -3 25.00 50 98
GAT GAT domain 0.17 1 21.00 79 104
DUF3361 Domain of unknown function (DUF3361) 5.7E-07 18 27.20 86 154
PolyA_pol_RNAbd Probable RNA and SrmB- binding site of polymerase A 6.6E-05 11 21.20 120 139
DUF3361 Domain of unknown function (DUF3361) 0.011 4 27.20 227 280
GAT GAT domain 7.6E-21 63 21.00 241 314
AdoHcyase S-adenosyl-L-homocysteine hydrolase 3E-05 12 25.00 243 310
VHS VHS domain 0.51 -1 20.60 269 285

407

VHS
AdoHcyase
GAT
DUF3361
PolyA_pol_RNAbd
DUF3361
GAT
AdoHcyase
VHS

References:

PolyA_pol_RNAbd

GAT
10747089 GGAs: a family of ADP ribosylation factor-binding proteins related to adaptors and associated with the Golgi complex. J Cell Biol 2000;149:81-94.
11301005 The GGAs promote ARF-dependent recruitment of clathrin to the TGN. Cell 2001;105:93-102.

DUF3361

AdoHcyase

VHS
10693761 Crystal structure of the VHS and FYVE tandem domains of Hrs, a protein involved in membrane trafficking and signal transduction. Cell 2000;100:447-456.
9872381 VHS domain marks a group of proteins involved in endocytosis and vesicular trafficking. FEBS Lett 1998;440:255-257.

Domain	Description	Evalue	Bits	GA	Start	End
VHS	VHS domain	8.5E-30	92	20.60	47	179
AdoHcyase	S-adenosyl-L-homocysteine hydrolase	0.89	-3	25.00	50	98
GAT	GAT domain	0.17	1	21.00	79	104
DUF3361	Domain of unknown function (DUF3361)	5.7E-07	18	27.20	86	154
PolyA_pol_RNAbd	Probable RNA and SrmB- binding site of polymerase A	6.6E-05	11	21.20	120	139
DUF3361	Domain of unknown function (DUF3361)	0.011	4	27.20	227	280
GAT	GAT domain	7.6E-21	63	21.00	241	314
AdoHcyase	S-adenosyl-L-homocysteine hydrolase	3E-05	12	25.00	243	310
VHS	VHS domain	0.51	-1	20.60	269	285