c2pfam

AT5G17690.1 :

Domain Description Evalue Bits GA Start End
Sigma70_ner Sigma-70, non-essential region 0.00039 9 24.50 63 112
NOA36 NOA36 protein 0.0029 6 25.00 64 92
Nop14 Nop14-like family 0.00046 7 34.90 66 102
CDC45 CDC45-like protein 0.0016 6 26.70 66 175
Chromo 'chromo' (CHRromatin Organisation MOdifier) domain 1.4E-17 52 20.40 108 156
Mtf2_C Polycomb-like MTF2 factor 2 1.2E-06 18 27.00 108 131
Chromo_shadow Chromo shadow domain 0.083 2 20.80 120 131
Sigma70_ner Sigma-70, non-essential region 0.45 -1 24.50 148 199
Chromo_shadow Chromo shadow domain 6.4E-07 19 20.80 412 440

445

Sigma70_ner
NOA36
Nop14
CDC45
Chromo
Mtf2_C
Chromo_shadow
Sigma70_ner
Chromo_shadow

References:

NOA36

Mtf2_C

Chromo

Chromo_shadow
7667093 The chromo shadow domain, a second chromo domain in heterochromatin-binding protein 1, HP1. Nucleic Acids Res 1995;23:3163-3173.

Sigma70_ner
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.
8858155 Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell 1996;87:127-136.

CDC45
9660782 The human homolog of Saccharomyces cerevisiae CDC45. J Biol Chem 1998;273:18205-18209.

Nop14
11694595 Novel stress-responsive genes EMG1 and NOP14 encode conserved, interacting proteins required for 40S ribosome biogenesis. Mol Biol Cell 2001;12:3644-3657.

Domain	Description	Evalue	Bits	GA	Start	End
Sigma70_ner	Sigma-70, non-essential region	0.00039	9	24.50	63	112
NOA36	NOA36 protein	0.0029	6	25.00	64	92
Nop14	Nop14-like family	0.00046	7	34.90	66	102
CDC45	CDC45-like protein	0.0016	6	26.70	66	175
Chromo	'chromo' (CHRromatin Organisation MOdifier) domain	1.4E-17	52	20.40	108	156
Mtf2_C	Polycomb-like MTF2 factor 2	1.2E-06	18	27.00	108	131
Chromo_shadow	Chromo shadow domain	0.083	2	20.80	120	131
Sigma70_ner	Sigma-70, non-essential region	0.45	-1	24.50	148	199
Chromo_shadow	Chromo shadow domain	6.4E-07	19	20.80	412	440