c2pfam

AT5G18390.1 :

Domain Description Evalue Bits GA Start End
Mtf2 Mtf2 family 0.014 4 27.00 63 103
PPR_3 Pentatricopeptide repeat domain 0.023 4 25.00 114 156
PPR PPR repeat 0.0044 7 25.00 119 140
PPR_2 PPR repeat family 0.00096 8 30.00 121 152
PPR_3 Pentatricopeptide repeat domain 5.9E-05 12 25.00 132 192
PPR PPR repeat 0.00017 11 25.00 152 170
PPR_2 PPR repeat family 0.00043 10 30.00 152 170
PPR_1 PPR repeat 4E-05 12 23.80 152 170
PPR_1 PPR repeat 5.2E-06 15 23.80 177 208
Mtf2 Mtf2 family 0.0038 6 27.00 181 223
PPR_2 PPR repeat family 1.2E-14 43 30.00 182 229
PPR PPR repeat 1E-07 21 25.00 184 213
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-06 17 27.00 185 250
PPR_3 Pentatricopeptide repeat domain 1.8E-06 17 25.00 204 250
PPR_1 PPR repeat 2.8E-16 48 23.80 211 244
PPR PPR repeat 2.8E-09 26 25.00 219 248
PPR_2 PPR repeat family 7.1E-07 18 30.00 223 250
DUF3368 Domain of unknown function (DUF3368) 0.036 3 27.30 231 248
PPR_3 Pentatricopeptide repeat domain 9E-09 24 25.00 240 298
PPR PPR repeat 0.00019 11 25.00 258 283
PPR_2 PPR repeat family 2.3E-10 30 30.00 258 297
PPR_1 PPR repeat 0.0017 7 23.80 258 279
DUF3368 Domain of unknown function (DUF3368) 0.0028 7 27.30 263 283
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-06 17 27.00 269 350
Mtf2 Mtf2 family 0.0099 5 27.00 269 299
PPR_1 PPR repeat 3E-05 13 23.80 282 303
PPR PPR repeat 0.00014 11 25.00 289 311
PPR_3 Pentatricopeptide repeat domain 0.00034 10 25.00 316 363
PPR_1 PPR repeat 2.2E-07 20 23.80 317 346
PPR_2 PPR repeat family 2E-05 14 30.00 321 355
PPR PPR repeat 0.00031 10 25.00 324 352
PPR_3 Pentatricopeptide repeat domain 2E-06 17 25.00 343 403
PPR_1 PPR repeat 9.7E-10 27 23.80 360 384
PPR_2 PPR repeat family 2.4E-12 36 30.00 362 402
PPR PPR repeat 7.2E-08 22 25.00 363 385
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-07 20 27.00 372 450
PPR_1 PPR repeat 0.001 8 23.80 389 418
PPR_2 PPR repeat family 0.00065 9 30.00 391 437
PPR PPR repeat 3.6E-06 16 25.00 394 423

459

Mtf2
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR_2
PPR_1
PPR_1
Mtf2
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
DUF3368
PPR_3
PPR
PPR_2
PPR_1
DUF3368
PPR_long
Mtf2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR

References:

DUF3368

Mtf2

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
Mtf2	Mtf2 family	0.014	4	27.00	63	103
PPR_3	Pentatricopeptide repeat domain	0.023	4	25.00	114	156
PPR	PPR repeat	0.0044	7	25.00	119	140
PPR_2	PPR repeat family	0.00096	8	30.00	121	152
PPR_3	Pentatricopeptide repeat domain	5.9E-05	12	25.00	132	192
PPR	PPR repeat	0.00017	11	25.00	152	170
PPR_2	PPR repeat family	0.00043	10	30.00	152	170
PPR_1	PPR repeat	4E-05	12	23.80	152	170
PPR_1	PPR repeat	5.2E-06	15	23.80	177	208
Mtf2	Mtf2 family	0.0038	6	27.00	181	223
PPR_2	PPR repeat family	1.2E-14	43	30.00	182	229
PPR	PPR repeat	1E-07	21	25.00	184	213
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-06	17	27.00	185	250
PPR_3	Pentatricopeptide repeat domain	1.8E-06	17	25.00	204	250
PPR_1	PPR repeat	2.8E-16	48	23.80	211	244
PPR	PPR repeat	2.8E-09	26	25.00	219	248
PPR_2	PPR repeat family	7.1E-07	18	30.00	223	250
DUF3368	Domain of unknown function (DUF3368)	0.036	3	27.30	231	248
PPR_3	Pentatricopeptide repeat domain	9E-09	24	25.00	240	298
PPR	PPR repeat	0.00019	11	25.00	258	283
PPR_2	PPR repeat family	2.3E-10	30	30.00	258	297
PPR_1	PPR repeat	0.0017	7	23.80	258	279
DUF3368	Domain of unknown function (DUF3368)	0.0028	7	27.30	263	283
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-06	17	27.00	269	350
Mtf2	Mtf2 family	0.0099	5	27.00	269	299
PPR_1	PPR repeat	3E-05	13	23.80	282	303
PPR	PPR repeat	0.00014	11	25.00	289	311
PPR_3	Pentatricopeptide repeat domain	0.00034	10	25.00	316	363
PPR_1	PPR repeat	2.2E-07	20	23.80	317	346
PPR_2	PPR repeat family	2E-05	14	30.00	321	355
PPR	PPR repeat	0.00031	10	25.00	324	352
PPR_3	Pentatricopeptide repeat domain	2E-06	17	25.00	343	403
PPR_1	PPR repeat	9.7E-10	27	23.80	360	384
PPR_2	PPR repeat family	2.4E-12	36	30.00	362	402
PPR	PPR repeat	7.2E-08	22	25.00	363	385
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-07	20	27.00	372	450
PPR_1	PPR repeat	0.001	8	23.80	389	418
PPR_2	PPR repeat family	0.00065	9	30.00	391	437
PPR	PPR repeat	3.6E-06	16	25.00	394	423