c2pfam

AT5G18540.1 :

Domain Description Evalue Bits GA Start End
GAGA_bind GAGA binding protein-like family 9E-05 12 21.80 67 164
Zip ZIP Zinc transporter 0.00044 9 27.70 77 150
SPOUT_MTase Predicted SPOUT methyltransferase 5.3E-05 12 20.90 80 158
SR-25 Nuclear RNA-splicing-associated protein 2.1E-07 20 55.00 82 156
YqfQ YqfQ-like protein 0.00054 9 27.00 89 158
Med19 Mediator of RNA pol II transcription subunit 19 7.2E-05 12 25.00 110 152
Peptidase_S49_N Peptidase family S49 N-terminal 0.0011 8 22.60 112 150
Presenilin Presenilin 0.0029 5 23.60 120 148

168

GAGA_bind
Zip
SPOUT_MTase
SR-25
YqfQ
Med19
Peptidase_S49_N
Presenilin

References:

SPOUT_MTase
17338813 Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinformatics. 2007;8:73.

YqfQ

SR-25
10708573 Molecular cloning and expression analysis of a putative nuclear protein, SR-25. Biochem Biophys Res Commun. 2000;269:444-450.
17952876 Dominant negative Rac1 attenuates paclitaxel-induced apoptosis in human melanoma cells through upregulation of heat shock protein 27: a functional proteomic analysis. Proteomics. 2007;7:4112-4122.

GAGA_bind
12177492 Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA. Plant Physiol 2002;129:1788-1794.

Med19
12584197 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3. J Biol Chem 2003;278:15123-15127.

Peptidase_S49_N
15611110 A novel thermostable membrane protease forming an operon with a stomatin homolog from the hyperthermophilic archaebacterium Pyrococcus horikoshii. J Biol Chem 2005;280:6588-6594.
15205439 Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages. J Bacteriol 2004;186:4369-4375.

Zip
9618566 Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proc Natl Acad Sci U S A 1998;95:7220-7224.

Presenilin
9384549 Presenilins and Alzheimer's disease. Curr Opin Neurobiol 1997;7:683-688.
9384549 Presenilins and Alzheimer's disease. Curr Opin Neurobiol 1997;7:683-688.
9437013 Interaction of presenilins with the filamin family of actin-binding proteins. J Neurosci 1998;18:914-922.
9790190 Destabilisation of beta-catenin by mutations in presenilin-1 potentiates neuronal apoptosis. Nature 1998;395:698-702.

Domain	Description	Evalue	Bits	GA	Start	End
GAGA_bind	GAGA binding protein-like family	9E-05	12	21.80	67	164
Zip	ZIP Zinc transporter	0.00044	9	27.70	77	150
SPOUT_MTase	Predicted SPOUT methyltransferase	5.3E-05	12	20.90	80	158
SR-25	Nuclear RNA-splicing-associated protein	2.1E-07	20	55.00	82	156
YqfQ	YqfQ-like protein	0.00054	9	27.00	89	158
Med19	Mediator of RNA pol II transcription subunit 19	7.2E-05	12	25.00	110	152
Peptidase_S49_N	Peptidase family S49 N-terminal	0.0011	8	22.60	112	150
Presenilin	Presenilin	0.0029	5	23.60	120	148