AT5G18960.1 :
Domain
Description
Evalue
Bits
GA
Start
End
WH1
WH1 domain
0.065
2
21.10
42
63
FAR1
FAR1 DNA-binding domain
3E-23
71
21.30
57
131
CtsR
Firmicute transcriptional repressor of class III stress genes (CtsR)
0.0013
7
19.70
87
112
WH1
WH1 domain
0.00087
8
21.10
207
232
FAR1
FAR1 DNA-binding domain
1.5E-22
69
21.30
225
300
CtsR
Firmicute transcriptional repressor of class III stress genes (CtsR)
0.0056
5
19.70
255
280
MULE
MULE transposase domain
5.4E-25
76
21.00
400
491
SWIM
SWIM zinc finger
3.5E-11
31
19.60
682
707
788
WH1
FAR1
CtsR
WH1
FAR1
CtsR
MULE
SWIM
References:
MULE
17130173
The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons.
Nucleic Acids Res. 2006; [Epub ahead of print]
CtsR
10692157
CtsR controls class III heat shock gene expression in the human pathogen Listeria monocytogenes.
Mol Microbiol 2000;35:800-811.
FAR1
10444599
The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling.
Genes Dev 1999;13:2017-2027.
WH1
8625410
Wiskott-Aldrich syndrome protein, a novel effector for the GTPase CDC42Hs, is implicated in actin polymerization.
Cell 1996;84:723-734.
9428607
Identification of homer as a homologue of the Wiskott-Aldrich syndrome protein suggests a receptor-binding function for WH1 domains
J Mol Med. 1997;75:769-771.
9312002
A novel proline-rich motif present in ActA of Listeria monocytogenes and cytoskeletal proteins is the ligand for the EVH1 domain, a protein module present in the Enas/VASP family.
EMBO J 1997;16:5433-5444.
SWIM
12151216
SWIM, a novel Zn-chelating domain present in bacteria, archaea and eukaryotes.
Trends Biochem Sci 2002;27:384-386.