c2pfam

AT5G19040.1 :

Domain Description Evalue Bits GA Start End
ResIII Type III restriction enzyme, res subunit 0.00028 11 20.90 17 57
IstB_IS21 IstB-like ATP binding protein 6.5E-05 12 24.10 26 55
AAA_25 AAA domain 8.7E-06 15 27.00 29 55
PhoH PhoH-like protein 2.8E-06 17 20.10 32 88
AAA_22 AAA domain 6E-05 13 27.00 32 61
AAA_16 AAA ATPase domain 7E-05 13 32.60 34 61
DUF2075 Uncharacterized conserved protein (DUF2075) 2E-05 14 20.30 34 60
IPT Isopentenyl transferase 1.9E-13 40 20.00 35 156
AAA_33 AAA domain 4.7E-07 20 27.00 35 135
Hpr_kinase_C HPr Serine kinase C-terminal domain 0.00011 12 25.60 36 71
RNA_helicase RNA helicase 0.0001 13 21.50 36 70
AAA_18 AAA domain 0.00029 11 29.40 36 149
IPPT IPP transferase 4.4E-25 79 23.60 68 143
AAA_25 AAA domain 0.62 -1 27.00 132 157
IPPT IPP transferase 1.3E-16 51 23.60 149 249

330

ResIII
IstB_IS21
AAA_25
PhoH
AAA_22
AAA_16
DUF2075
IPT
AAA_33
Hpr_kinase_C
RNA_helicase
AAA_18
IPPT
AAA_25
IPPT

References:

IstB_IS21

AAA_16

Hpr_kinase_C
9570401 A novel protein kinase that controls carbon catabolite repression in bacteria. Mol Microbiol 1998;27:1157-1169.
11904409 Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 A resolution: Mimicking the product/substrate of the phospho transfer reactions. Proc Natl Acad Sci U S A 2002;99:3458-3463.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

DUF2075

ResIII

AAA_33

AAA_25

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_22

IPPT
9294434 The modified nucleoside 2-methylthio-N6-isopentenyladenosine in tRNA of Shigella flexneri is required for expression of virulence genes. J Bacteriol 1997;179:5777-5782.
8139535 Subcellular locations of MOD5 proteins: mapping of sequences sufficient for targeting to mitochondria and demonstration that mitochondrial and nuclear isoforms commingle in the cytosol. Mol Cell Biol 1994;14:2298-2306.
1850093 MOD5 translation initiation sites determine N6-isopentenyladenosine modification of mitochondrial and cytoplasmic tRNA. Mol Cell Biol 1991;11:2382-2390.

IPT
1465104 Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4. Mol Gen Genet 1992;235:292-303.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
ResIII	Type III restriction enzyme, res subunit	0.00028	11	20.90	17	57
IstB_IS21	IstB-like ATP binding protein	6.5E-05	12	24.10	26	55
AAA_25	AAA domain	8.7E-06	15	27.00	29	55
PhoH	PhoH-like protein	2.8E-06	17	20.10	32	88
AAA_22	AAA domain	6E-05	13	27.00	32	61
AAA_16	AAA ATPase domain	7E-05	13	32.60	34	61
DUF2075	Uncharacterized conserved protein (DUF2075)	2E-05	14	20.30	34	60
IPT	Isopentenyl transferase	1.9E-13	40	20.00	35	156
AAA_33	AAA domain	4.7E-07	20	27.00	35	135
Hpr_kinase_C	HPr Serine kinase C-terminal domain	0.00011	12	25.60	36	71
RNA_helicase	RNA helicase	0.0001	13	21.50	36	70
AAA_18	AAA domain	0.00029	11	29.40	36	149
IPPT	IPP transferase	4.4E-25	79	23.60	68	143
AAA_25	AAA domain	0.62	-1	27.00	132	157
IPPT	IPP transferase	1.3E-16	51	23.60	149	249