c2pfam

AT5G19350.1 :

Domain Description Evalue Bits GA Start End
RRM_7 RNA recognition motif 0.14 2 27.00 25 83
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-16 50 20.70 26 95
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.0031 6 27.00 43 110
PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter 0.0071 6 27.00 53 83
SET_assoc Histone lysine methyltransferase SET associated 0.072 2 21.00 65 91
RRM_7 RNA recognition motif 0.00041 10 27.00 117 168
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-18 55 20.70 118 184
DUF4078 Domain of unknown function (DUF4078) 0.00022 11 25.00 156 189
PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter 0.15 2 27.00 156 184
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.069 2 27.00 158 191
SET_assoc Histone lysine methyltransferase SET associated 0.02 4 21.00 162 189
DUF1866 Domain of unknown function (DUF1866) 3.3E-05 13 20.40 223 304
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-06 15 27.00 235 310
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-20 60 20.70 240 302
RRM_3 RNA binding motif 3.5E-09 26 21.30 242 295
RRM_7 RNA recognition motif 0.018 5 27.00 243 271
PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter 0.0034 7 27.00 251 318
SET_assoc Histone lysine methyltransferase SET associated 0.14 1 21.00 273 297
Trnau1ap Selenocysteine tRNA 1 associated proteins 5.1E-06 17 27.00 323 401

425

RRM_7
RRM_1
RRM_5
PHM7_cyt
SET_assoc
RRM_7
RRM_1
DUF4078
PHM7_cyt
RRM_5
SET_assoc
DUF1866
RRM_5
RRM_1
RRM_3
RRM_7
PHM7_cyt
SET_assoc
Trnau1ap

References:

RRM_7

RRM_5

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

PHM7_cyt

Trnau1ap

DUF1866

DUF4078

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

SET_assoc
12389037 Structure of the SET domain histone lysine methyltransferase Clr4. Nat Struct Biol 2002;0:0-0.
12575990 Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 2003;28:59-62.

Domain	Description	Evalue	Bits	GA	Start	End
RRM_7	RNA recognition motif	0.14	2	27.00	25	83
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.1E-16	50	20.70	26	95
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.0031	6	27.00	43	110
PHM7_cyt	Cytosolic domain of 10TM putative phosphate transporter	0.0071	6	27.00	53	83
SET_assoc	Histone lysine methyltransferase SET associated	0.072	2	21.00	65	91
RRM_7	RNA recognition motif	0.00041	10	27.00	117	168
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.2E-18	55	20.70	118	184
DUF4078	Domain of unknown function (DUF4078)	0.00022	11	25.00	156	189
PHM7_cyt	Cytosolic domain of 10TM putative phosphate transporter	0.15	2	27.00	156	184
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.069	2	27.00	158	191
SET_assoc	Histone lysine methyltransferase SET associated	0.02	4	21.00	162	189
DUF1866	Domain of unknown function (DUF1866)	3.3E-05	13	20.40	223	304
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.1E-06	15	27.00	235	310
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.6E-20	60	20.70	240	302
RRM_3	RNA binding motif	3.5E-09	26	21.30	242	295
RRM_7	RNA recognition motif	0.018	5	27.00	243	271
PHM7_cyt	Cytosolic domain of 10TM putative phosphate transporter	0.0034	7	27.00	251	318
SET_assoc	Histone lysine methyltransferase SET associated	0.14	1	21.00	273	297
Trnau1ap	Selenocysteine tRNA 1 associated proteins	5.1E-06	17	27.00	323	401